PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000528-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27876.9 Da    PI: 4.6642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000528-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-193791256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +++++f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  NNU_000528-RA 37 KNKRRFSDEQIKSLETMFESETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 91
                   67889*************************************************9 PP
2HD-ZIP_I/II122.91.5e-3938129293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krr+s+eq+k+LE++Fe+e+kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++ydal+++ e+L+ke+++L  el++
  NNU_000528-RA  38 NKRRFSDEQIKSLETMFESETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILTANYDALASRFETLKKEKQTLMVELQR 129
                    79************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.23E-192195IPR009057Homeodomain-like
PROSITE profilePS5007118.4153393IPR001356Homeobox domain
SMARTSM003891.2E-163597IPR001356Homeobox domain
PfamPF000467.0E-173791IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1938100IPR009057Homeodomain-like
CDDcd000862.19E-144294No hitNo description
PRINTSPR000311.0E-56473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57389IPR000047Helix-turn-helix motif
PfamPF021831.2E-1693134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLQEEEYSPA VTAGKVESST CLNQLPSVMS TRKKKNKNKR RFSDEQIKSL ETMFESETKL  60
EPRKKLQLAR ELGLQPRQVA IWFQNKRARW KSKQLERDYS ILTANYDALA SRFETLKKEK  120
QTLMVELQRL NDILGKPRDE NRWCQSTTAA NSTDGDSDNG DAKCESDTKP SVLLEAEDQR  180
VVFSSDDENS RSLECFGQEE EPELNMAETA DGSLTSPENW CSFNSGSLFD QPCSGSQWWD  240
FWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251668.11e-179PREDICTED: homeobox-leucine zipper protein ATHB-12-like isoform X1
SwissprotP468977e-63ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1U7ZS641e-177A0A1U7ZS64_NELNU; homeobox-leucine zipper protein ATHB-12-like isoform X1
STRINGXP_010251668.11e-178(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-61homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]