PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000625-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 210aa    MW: 24295.5 Da    PI: 9.0374
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000625-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind73.15.4e-23575272
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
   HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72
                   Fl+k+y++++++++++ isw++n ++fvv+++ +fa+++Lp+yFkh+n++SF+ Q n+Y F  ++ +++++
  NNU_000625-RA  5 FLTKTYQLVDNASTDDAISWNDNDTTFVVWKPADFAQDLLPNYFKHNNISSFIPQRNTYIFFFLSPSTANR 75
                   9************************************************************9988877664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-20198IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-21370IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-19472IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-17567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-12528IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-124355IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-125668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE profilePS5010210.377128210IPR000504RNA recognition motif domain
SuperFamilySSF549284.34E-9141186IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000763.8E-6141183IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3309.0E-10141185IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLAPFLTKTY QLVDNASTDD AISWNDNDTT FVVWKPADFA QDLLPNYFKH NNISSFIPQR  60
NTYIFFFLSP STANRTGSLT CRCISRLHLR LLSHTHFSCF TSAAWVPERS TSNHQNRMTQ  120
CRKRVAAKTG LLNSVPMLLA TDDQSLERAF SPYSEILELK VIGDREMGRY RGFGFVVFCD  180
EQCIEDYADR RADSRWQKHH RQLGAVKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-28heat shock transcription factor B4