PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000693-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 298aa MW: 32304.1 Da PI: 8.7446

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000693-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4e-14	90	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky NNU_000693-RA 90 PWTEEEHRLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 134 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.647	5	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	17.48	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	2.39E-17	85	140	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-17	86	137	IPR006447	Myb domain, plants
SMART	SM00717	2.2E-10	87	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-11	89	134	IPR009057	Homeodomain-like
CDD	cd00167	1.82E-9	90	135	No hit	No description
Pfam	PF00249	2.9E-11	90	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSRSCSQCGN NGHNSRTCAE AGSGAASESG GFMLFGVRVT EGSIRKSVSM NNLSQYEQPQ 60 EPNADVNDGY ASDDVCHASA GNRERKRGVP WTEEEHRLFL VGLQKVGKGD WRGISRNFVK 120 TRTPTQVASH AQKYFLRRNN LNRRRRRSSL FDITTDTFMG LPMEEETVYQ ETTTQSPAPV 180 NCNIRFPVPA FPVTLSPVVL PGGGENPIEN LTLGKSEQTN APTKVVRPIP ILPIPPASRM 240 ADLNLNQKSS ADPSPLSLKL STPSSDQQAS PRHSAFQAMP SFGSGDLDSN GGSIITVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255646.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-66	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1U8A369	0.0	A0A1U8A369_NELNU; transcription factor MYB1R1-like
STRING	XP_010255646.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	9e-71	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]