PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000704-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 284aa MW: 30680.9 Da PI: 5.4872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000704-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.7e-11	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq NNU_000704-RA 175 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKAVVLDEIINYIQSLQ 222 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-18	169	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.16E-11	169	226	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-18	171	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.018	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-8	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MDPPSLINEG SFPAANPSPY SLAEIWPFPL NGGGGVGDSA GVLGLRRNNF GQNLGGFVES 60 AGTGTAVNRD MSIDESTITE QSVSRGGNGR KRRDAGSEDE SSKLVSTSSG NDVNDCDGKR 120 LKVSRSKDEN GDSKTETEAS SGAGNKPAEQ NTQPLERPKQ DYIHVRARRG QATDSHSLAE 180 RARREKISER MKVLQDLVPG CNKVIGKAVV LDEIINYIQS LQRQVEFLSM KLEAVNSRMN 240 PGIEGFPSKD FGAQTFDTTS MAFSSQAARE YGQGSPPEWL HMQI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255699.1	0.0	PREDICTED: transcription factor bHLH79-like
Swissprot	Q69WS3	8e-83	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A1U7ZNK9	0.0	A0A1U7ZNK9_NELNU; transcription factor bHLH79-like
STRING	XP_010255699.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	7e-90	BIG PETAL P