PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000725-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 229aa MW: 25557 Da PI: 5.772

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000725-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.3	2.1e-13	2	47	56	101
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +am+s++y+A++r r Pv+G++g+i +lq q++q+++el++++++l NNU_000725-RA 2 EAMRSIIYQANIRDRFPVHGCCGIICHLQYQIQQTEQELNAVNAQL 47 69***************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.589	1	47	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-10	2	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MEAMRSIIYQ ANIRDRFPVH GCCGIICHLQ YQIQQTEQEL NAVNAQLAIY RQHHIASSPQ 60 HHSPSSQLQL GMPSPNNALP LFQHHSHQPY NAVATGVSLA PHHSFSNANN AVYNTAMYMD 120 SKDNLVSPLW VQHPYNNNNN NSSVAIQSQL LASHQIPIHQ EATEAPQDYD EIPPFFDTID 180 DRQSYIDSKE AYDSSSSDSS LKDTTQSIEH VSENELKSAA ACFSLTSVN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255986.1	1e-145	PREDICTED: LOB domain-containing protein 27-like
TrEMBL	A0A1U8A2S6	1e-144	A0A1U8A2S6_NELNU; LOB domain-containing protein 27-like
STRING	XP_010255986.1	1e-145	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-14	LOB domain-containing protein 27