PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000742-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36542.4 Da    PI: 4.6906
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000742-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1987140356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  NNU_000742-RA  87 KKRRLTAEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARWK 140
                    56789************************************************9 PP
2HD-ZIP_I/II127.94.3e-4186176191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    ekkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdye Lk++y++lk + ++L ke+e+L++e+
  NNU_000742-RA  86 EKKRRLTAEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYEGLKASYNSLKVNYDNLVKEKEKLKTEV 176
                    69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-2072144IPR009057Homeodomain-like
PROSITE profilePS5007117.76782142IPR001356Homeobox domain
SMARTSM003891.4E-1885146IPR001356Homeobox domain
CDDcd000861.08E-1787143No hitNo description
PfamPF000461.2E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2088149IPR009057Homeodomain-like
PRINTSPR000314.9E-6113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000314.9E-6122138IPR000047Helix-turn-helix motif
PfamPF021839.4E-15142182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEAGRRVYNY NGSNMTVILR NEGIPRSSEA LLISSSSPTT FHGSRSSMVS FGVDRGNTPE  60
RSFFFQPPEQ EENGDEDLDD CFHQPEKKRR LTAEQVQFLE RNFEVENKLE PERKVQLAKE  120
LGLQPRQVAI WFQNRRARWK TKQLEKDYEG LKASYNSLKV NYDNLVKEKE KLKTEVLLLK  180
DRFLLKEKER GSSETSDPKN PPNPQPQKAI PNTTSEERES EVPIVVCKQE DISSANSDVF  240
GSESPNYANA GNYSSLLEPV DSSHVFEPDH SDLSQDEEDD MSKSLFPAMY NLSKLEDAVY  300
SGPAGHSCNY GLLGEDQALW F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256239.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022833e-42HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A1U8A4M00.0A0A1U8A4M0_NELNU; homeobox-leucine zipper protein HAT5-like
STRINGXP_010256239.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-39homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]