PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000744-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ZF-HD

Protein Properties

Length: 174aa MW: 18865.9 Da PI: 8.6033

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000744-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.4	8.5e-29	96	151	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY+eC kNhA s+Ggh+vDGCg fmps geegt++alkCaAC+C R F R+e+e NNU_000744-RA 96 SVRYRECFKNHAGSIGGHVVDGCGKFMPS-GEEGTPEALKCAACDCRRTFYRKEMEG 151 79************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-19	96	150	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.9E-27	97	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-26	98	149	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.202	99	148	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MRLGTEKQFS TPSQTQTLDH LQQHHHHRPH QPQGHGRNPD PYSDPVPVTI AVSGATSAPV 60 AGGSNSARTT PPPPPLPLPP PTTATISTTT KSTATSVRYR ECFKNHAGSI GGHVVDGCGK 120 FMPSGEEGTP EALKCAACDC RRTFYRKEME GEPQSGANCY YYHNKNHDGT RQHK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053289.1	1e-127	PREDICTED: zinc-finger homeodomain protein 3-like
TrEMBL	A0A1U8Q3A4	1e-125	A0A1U8Q3A4_NELNU; zinc-finger homeodomain protein 3-like
STRING	XP_010254805.1	5e-62	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	3e-27	homeobox protein 33