PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000795-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 1085aa MW: 120066 Da PI: 8.6163

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000795-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.1	1.9e-41	155	232	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+ dls+ak+yhrrhkvCe+hsk++++lv g++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ NNU_000795-RA 155 MCQVDDCKGDLSNAKDYHRRHKVCEFHSKTTKALVGGQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 232 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.2E-35	149	217	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.359	153	230	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-38	154	233	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-30	156	229	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	3.1E-4	874	977	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.2E-6	874	970	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.06E-4	878	973	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence Send to blast
MEDVGAQVFP PIFIHQALPG RFCEAPAMAK KRDLPWQSPN FQQQQQQHQR FNSVFQSSKG 60 NWNPSSWDWD SMMFVAKPSE TEVLHLGTAA VVESEQKKKG EETLKNLVVK KGSVDEDGEK 120 LTLKLGGGLY SVDESAARPN KRVRSGSPGS GNYPMCQVDD CKGDLSNAKD YHRRHKVCEF 180 HSKTTKALVG GQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDASSRLL 240 GPGNRENSGT GNMDVVNLLT ILSRLQGNNV DRSANASSLP DRERLIQILN KINASPISGN 300 SGPRLPVPGS FDLNVSQEAS SDNLNKINGN TSSPSTMDLL AVLSAALAAS NPDALALLSQ 360 INNHSYDGDK SKLNSLDQAD GSRLQNKPIS RYTSIGGERN NGTFQSPVGT PDCHAQIPKS 420 SLPFQLFSSS PEGGSPPKLG SSRRYFSSES SNPMEERSPS SSPVVQKLFP LHAETEILKH 480 ERMSISGEDN ATVETSTTRD WTSPLELFKG QNGRVGNGSV QSLQYQGGYT SSSGSDHSPS 540 SSNSDAQDRT GRIIFKLFDK DPSNFPGTLR SQILNWLSHS PSEMESYIRP GCVVLSVYVS 600 MPSTAWEHFQ KNLFHLAKLL VQGSASDFWR NGRFLVHTDR QLVSHKDGKI RLCKAWRTWS 660 APELISVSPL AVVGGEETSL VLKGRNLTAP GTKIHCTYLG GYKTKEVPGS TYQVAMYDDT 720 SFERFKFPGG APGVLGRCFI EVENGFKGNC FPVIIADATI CQELRGLESE FDQVSRTACI 780 VTENKFQDLG RPQSREDVLH FLNELGWLFQ RKSNPSKPEG PNFSHSRFKF IFTFSVERDW 840 CAVVKTLLDI LVEKNLGPDG PPKASIELLS DIQLLNRAVK RKCRNMVDLL IHYSVTLGDN 900 TKQYLFPPNS VGPGGVTPLH LAACIQGLEE IVDSLTNDPQ QIGLKCWNSL PDANGQTPFT 960 YSLMRNNHSY NRMVARKLAE RKRGQVSIPV GDEISLDQSW IIDEQADKPL PETLQGRRSC 1020 ARCAVVATRY YKRMPGSQGL LHRPYVHSML AIAAVCVCVC LFLRGSPDIG SVAPFKWENL 1080 DYGWS

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence Send to blast

MEDVGAQVFP PIFIHQALPG RFCEAPAMAK KRDLPWQSPN FQQQQQQHQR FNSVFQSSKG  60
NWNPSSWDWD SMMFVAKPSE TEVLHLGTAA VVESEQKKKG EETLKNLVVK KGSVDEDGEK  120
LTLKLGGGLY SVDESAARPN KRVRSGSPGS GNYPMCQVDD CKGDLSNAKD YHRRHKVCEF  180
HSKTTKALVG GQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDASSRLL  240
GPGNRENSGT GNMDVVNLLT ILSRLQGNNV DRSANASSLP DRERLIQILN KINASPISGN  300
SGPRLPVPGS FDLNVSQEAS SDNLNKINGN TSSPSTMDLL AVLSAALAAS NPDALALLSQ  360
INNHSYDGDK SKLNSLDQAD GSRLQNKPIS RYTSIGGERN NGTFQSPVGT PDCHAQIPKS  420
SLPFQLFSSS PEGGSPPKLG SSRRYFSSES SNPMEERSPS SSPVVQKLFP LHAETEILKH  480
ERMSISGEDN ATVETSTTRD WTSPLELFKG QNGRVGNGSV QSLQYQGGYT SSSGSDHSPS  540
SSNSDAQDRT GRIIFKLFDK DPSNFPGTLR SQILNWLSHS PSEMESYIRP GCVVLSVYVS  600
MPSTAWEHFQ KNLFHLAKLL VQGSASDFWR NGRFLVHTDR QLVSHKDGKI RLCKAWRTWS  660
APELISVSPL AVVGGEETSL VLKGRNLTAP GTKIHCTYLG GYKTKEVPGS TYQVAMYDDT  720
SFERFKFPGG APGVLGRCFI EVENGFKGNC FPVIIADATI CQELRGLESE FDQVSRTACI  780
VTENKFQDLG RPQSREDVLH FLNELGWLFQ RKSNPSKPEG PNFSHSRFKF IFTFSVERDW  840
CAVVKTLLDI LVEKNLGPDG PPKASIELLS DIQLLNRAVK RKCRNMVDLL IHYSVTLGDN  900
TKQYLFPPNS VGPGGVTPLH LAACIQGLEE IVDSLTNDPQ QIGLKCWNSL PDANGQTPFT  960
YSLMRNNHSY NRMVARKLAE RKRGQVSIPV GDEISLDQSW IIDEQADKPL PETLQGRRSC  1020
ARCAVVATRY YKRMPGSQGL LHRPYVHSML AIAAVCVCVC LFLRGSPDIG SVAPFKWENL  1080
DYGWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-32	146	229	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256977.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1U7ZXH0	0.0	A0A1U7ZXH0_NELNU; squamosa promoter-binding-like protein 14
STRING	XP_010256977.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]