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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_000820-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 300aa MW: 32726.1 Da PI: 8.4268 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 110.6 | 8.3e-35 | 63 | 120 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
v YkeClkNhAas+Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
NNU_000820-RA 63 VVSYKECLKNHAASIGGHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRREPDE 120
689*****************************99********************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF04770 | 1.3E-29 | 64 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| ProDom | PD125774 | 6.0E-18 | 64 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 5.3E-32 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.401 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 2.6E-30 | 195 | 265 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.59E-20 | 197 | 265 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 1.3E-25 | 204 | 260 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 300 aa Download sequence Send to blast |
MDLATDTTPN STRKTQETDG ETPSPTQPAK LNEHHISKPL SFSNGVLKRH HHQNHTPTTP 60 AAVVSYKECL KNHAASIGGH ALDGCGEFMP SPSATPTDPT SLKCAACGCH RNFHRREPDE 120 GTHTVDYHHQ QLQHHPHQPI VARGRSPNSA SPPPLLSSYY PSAPHMLLAL STGLSGAPEN 180 HVSTTAAATT AATVTMTTTN PNGRKRFRTK FSQEQKEKMH AFSERLGWKM QKTDEEVVEE 240 FCNEIGVGKG VLKVWMHNNK HTFGKRDANG SRSSPDTNHN HSHHNDSSAH VTTNGSSSSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 3e-21 | 205 | 262 | 18 | 75 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010257380.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 9 | ||||
| TrEMBL | A0A1U7ZYG6 | 0.0 | A0A1U7ZYG6_NELNU; zinc-finger homeodomain protein 9 | ||||
| STRING | XP_010257380.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G28920.1 | 4e-63 | homeobox protein 34 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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