PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000841-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 290aa    MW: 31587.9 Da    PI: 6.6829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000841-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11174221455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka iL + ++YI+sLq
  NNU_000841-RA 174 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALILDEIINYIQSLQ 221
                    8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-18167239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-11168225No hitNo description
PROSITE profilePS5088816.037170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18171238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDPPLINECP FPAANPSSYS LAEIWPFPLN GGGGVGDSAG VLGLRRNHFR QNSGGFVDSS  60
GTGTAVNRDM SMNESTVTEQ SVSRGGNGRK RSDAGSEDES SKLVSTSSGN DVNDCDGKRL  120
KVSRSKDENG DSKTETEASS GARNKPAEQN TQPPERPKQD YIHVWARKGQ ATDSHSLAER  180
ARREKISERM KILQDLVPGC NKVIGKALIL DEIINYIQSL QRQVQFLSMK LEAVNSRMNP  240
GIGGFPSKDT FDTTSMAFSS QAAKEYDQGS PPEWLHMQIG SSFKDQHNFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257722.10.0PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ69WS33e-76BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1U7ZTQ80.0A0A1U7ZTQ8_NELNU; transcription factor bHLH79-like isoform X2
STRINGXP_010257697.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-77BIG PETAL P