PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000849-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 503aa MW: 56948.8 Da PI: 7.4467

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000849-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.5	2.1e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skR+ngilKKA ELS+LCd+++a+i+fs+tgk NNU_000849-RA 9 KRLENTSSRQVTYSKRKNGILKKARELSILCDIDIALIMFSPTGK 53 789****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.974	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.1E-33	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-26	2	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.17E-29	2	75	No hit	No description
PRINTS	PR00404	2.4E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-22	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MGRVKLKIKR LENTSSRQVT YSKRKNGILK KARELSILCD IDIALIMFSP TGKPTLCLGE 60 HSNFEEVIGK FAQLTPQERA KRKLESLEEL TNHSRLLQTQ LSETHKRLSY WTHPDKINNI 120 EHLRAMEDSL KESLNQIRAH KFQNGMHLPL GMSVEQPQAQ PISWLPGNDS QHMMLAEDPN 180 LLPHRDLECS TDASIPSYSG FFSACKTEVD SSGQESNALN ELSRNACLRL QLGGQYPYPS 240 YGFNLLDEKK LKTETKMSLH ENPVDFQVNS GFEPTRPGYD TSHQSWASTS GPCAIAVFDQ 300 QSYPQPRRVW TIVLCHGSER CCRRLSKGPF PVTLCWTTNP KNANIANLPA NSWGKIQGIK 360 DAAGVSNLIG RQAVVLEDGI LVHASWVLYV LPPSDLHVME QDELNHEEGR RRRKIFNFSG 420 IVPRWHIDNA DLGENFGQQH PCDTQHGPPP ILKLRLDEPF QVVGVLCKSQ RIESIVAWET 480 VINVKLLEHI EDADVHWHCL TLK

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MGRVKLKIKR LENTSSRQVT YSKRKNGILK KARELSILCD IDIALIMFSP TGKPTLCLGE  60
HSNFEEVIGK FAQLTPQERA KRKLESLEEL TNHSRLLQTQ LSETHKRLSY WTHPDKINNI  120
EHLRAMEDSL KESLNQIRAH KFQNGMHLPL GMSVEQPQAQ PISWLPGNDS QHMMLAEDPN  180
LLPHRDLECS TDASIPSYSG FFSACKTEVD SSGQESNALN ELSRNACLRL QLGGQYPYPS  240
YGFNLLDEKK LKTETKMSLH ENPVDFQVNS GFEPTRPGYD TSHQSWASTS GPCAIAVFDQ  300
QSYPQPRRVW TIVLCHGSER CCRRLSKGPF PVTLCWTTNP KNANIANLPA NSWGKIQGIK  360
DAAGVSNLIG RQAVVLEDGI LVHASWVLYV LPPSDLHVME QDELNHEEGR RRRKIFNFSG  420
IVPRWHIDNA DLGENFGQQH PCDTQHGPPP ILKLRLDEPF QVVGVLCKSQ RIESIVAWET  480
VINVKLLEHI EDADVHWHCL TLK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257792.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	7e-72	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1U7ZVS6	0.0	A0A1U7ZVS6_NELNU; agamous-like MADS-box protein AGL65 isoform X1
STRING	XP_010257787.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-72	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]