PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000933-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 499aa MW: 56280.1 Da PI: 6.5952

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000933-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.3	4.1e-31	158	253	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ + ++k+rr r+ tr gCka ++v+++++gkw+v+kle++HnHel+ NNU_000933-RA 158 NFYNAYAKQMGFSIRVNSYYRSKKDNSIISREFCCSKEGYRREKRVRkidssdDTKKRRARPITREGCKALMTVRRRDSGKWYVAKLEKNHNHELV 253 6**************************************99988889999999*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-28	158	253	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
EYKFDRWILL KILSRDIERL ESVLYFGSVG RGQLPLYPLI VLVFLFILSV SNPPPLSLSY 60 TLTQADYCLQ GRGEEKEEKQ NNMEEEPVGQ GKELVDAFVT LEDEGEECCV VEDVEVPMVL 120 DDAKKEDSIN IELSKCLVGG IIEPTLDMEF ASEEDARNFY NAYAKQMGFS IRVNSYYRSK 180 KDNSIISREF CCSKEGYRRE KRVRKIDSSD DTKKRRARPI TREGCKALMT VRRRDSGKWY 240 VAKLEKNHNH ELVTPAMRHF LRSHRQDYDP KKSLIDTLGS PLMGSSSTLN VFSEDCGGFK 300 AIKCAEEGVA SDHSFRVALS ALQEARYKIL DAKKNAANAS KIETMDTASY QEGNNTTGSQ 360 VHGSIQITAI DTEKIRNESR TSNNRPKSVL EQSASRISTC TKCECPGHDS HTCLWLKDPG 420 TNTILQSSAM QLFKRGRIIP ISGVNSAEIL IIGKWRSCFS FVLEVLLGQH LLLITGPLIN 480 YEFLCQIFPS PPPPPLLDE

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

EYKFDRWILL KILSRDIERL ESVLYFGSVG RGQLPLYPLI VLVFLFILSV SNPPPLSLSY  60
TLTQADYCLQ GRGEEKEEKQ NNMEEEPVGQ GKELVDAFVT LEDEGEECCV VEDVEVPMVL  120
DDAKKEDSIN IELSKCLVGG IIEPTLDMEF ASEEDARNFY NAYAKQMGFS IRVNSYYRSK  180
KDNSIISREF CCSKEGYRRE KRVRKIDSSD DTKKRRARPI TREGCKALMT VRRRDSGKWY  240
VAKLEKNHNH ELVTPAMRHF LRSHRQDYDP KKSLIDTLGS PLMGSSSTLN VFSEDCGGFK  300
AIKCAEEGVA SDHSFRVALS ALQEARYKIL DAKKNAANAS KIETMDTASY QEGNNTTGSQ  360
VHGSIQITAI DTEKIRNESR TSNNRPKSVL EQSASRISTC TKCECPGHDS HTCLWLKDPG  420
TNTILQSSAM QLFKRGRIIP ISGVNSAEIL IIGKWRSCFS FVLEVLLGQH LLLITGPLIN  480
YEFLCQIFPS PPPPPLLDE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259175.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010259189.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X4
TrEMBL	A0A1U7ZZ72	1e-154	A0A1U7ZZ72_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A1U7ZZ81	1e-154	A0A1U7ZZ81_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X4
STRING	XP_010259163.1	1e-155	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-35	FAR1-related sequence 5