PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000939-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 582aa    MW: 64913.7 Da    PI: 9.0145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000939-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008197115321
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                    C+ Cgk F ++  L  H+r
  NNU_000939-RA  97 CKECGKGFQSWKALFGHMR 115
                    ******************8 PP
2zf-C2H212.40.00048496518123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+C k+Fs+   L  H r+H
  NNU_000939-RA 496 HECPICFKVFSSGQALGGHKRSH 518
                    79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.48E-5533No hitNo description
PROSITE profilePS501579.016936IPR007087Zinc finger, C2H2
PfamPF139122.4E-5932IPR007087Zinc finger, C2H2
SMARTSM003551.2931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.86695122IPR007087Zinc finger, C2H2
SMARTSM003550.02295117IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.45E-596121No hitNo description
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
PfamPF139122.9E-797119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00197118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.7E-11411436IPR007087Zinc finger, C2H2
PROSITE profilePS501579.91412439IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-7412434No hitNo description
SMARTSM003550.14412434IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280414434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-7491518No hitNo description
PROSITE profilePS501579.39496518IPR007087Zinc finger, C2H2
PfamPF139125.1E-11496519IPR007087Zinc finger, C2H2
SMARTSM003550.09496518IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280498518IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MEEHQEQKHL CKFCKKTFPC GRSLGGHMRS HMTMNSVETD EKLTRKKVSS VNGERNSNNY  60
MCSEAGGHVG YGLRENPKKT WRLSGSKDGA LREGKACKEC GKGFQSWKAL FGHMRCHSER  120
ERICESLEDD SWTDENQKLV MDSQSDNEAA APRRRRRSRR MRYKTISTSS SFSFANASSS  180
VSDIEQEQEE VAMCLMMLSR DVGHWGGLNS VAEYSDNNSV VLEARSSGFH KQVTRKGGTD  240
FTSYGDETMK MKKPRERRLE SGASDPENAH VQKGRSECGA SNSGVLRSGI KKVESEVSLV  300
GFPMDDEFKK PKMDKIAGFE LSDMELRKDS CNKNKLSPKK GKLKYSEAEL GKRSTKETGR  360
NRTNWEYKKY NSSKRTRTDA YIPELGGDFC KKKKYDALDS EACGDSQKKS RFECTTCNKI  420
FHSYQALGGH RASHKKVKGC FASKVDSSDN SIETDASPEP TADSKLVRSC SNENIIDRDV  480
AGSVEASSGP KKSKGHECPI CFKVFSSGQA LGGHKRSHLI GGSEARGNQT IVIQQQLPEI  540
RDLLDLNLPA PIEEDSSGRV GFNPWWVGSN HKHEAMVGMI SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152159RRRRRSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259244.10.0PREDICTED: uncharacterized protein LOC104598750
TrEMBLA0A1U7ZXJ70.0A0A1U7ZXJ7_NELNU; uncharacterized protein LOC104598750
STRINGXP_010259244.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-50C2H2-like zinc finger protein