PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000941-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 542aa MW: 60696.2 Da PI: 3.9082

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000941-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.5e-07	264	311	3	47
SS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+e+++l+ ++v + lG++ W+ + ++ Rt k+++s+++++ NNU_000941-RA 264 KWTEEDEQLFREVVfsnpASLGKNFWDNLSMVFP-YRTKKEIISYYFNV 311 8***********4444455666******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1820	6.4E-4	232	359	IPR029058	Alpha/Beta hydrolase fold
SMART	SM00717	2.2E-4	261	314	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.72E-5	263	312	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-6	264	311	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-8	264	312	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MLRLNSFVIM SSMVYKRPLV DEESYELACK HSRQLEYSNQ LASFVDIVPY NDMLQKPQSS 60 VGEGDLSKSE CKERLNVTIT ELSAGANEDF ETTVPVSASS LSWVTSSTSE EDSRSEAVVR 120 VSFSPDFSEP DFQARVLLHS EEVYSSFLDY PPRRLVSVGP DHQADIPAWG LQDNYCLGEP 180 TVEDDSDEKL MGNCVISMPD FEQSVCSSND FGYGRIDCSC PDRGSIRCVR QHVMEAREKL 240 RETLGQEKFV ELGFCDMGEE VASKWTEEDE QLFREVVFSN PASLGKNFWD NLSMVFPYRT 300 KKEIISYYFN VFMLRRRAEQ NRVDPMNIDS DNDEWQGSYY DGDEELGITE EDEDSVVESP 360 VGQDVLGYDQ EIHDEDFHED EDDGDEDEIS EHNDDSDLEA DRNCIGEGNE VSEACMGKSL 420 DCGFAIAAKL VEKNPQDGGE DHDVQDESCT SYECQTNSSS GLVDAGSVLQ ENKVEIGTSS 480 GGIGGGVENG YVMEPCDARV WDVGYFTGPK KDVEFLSTCN MIEEVFGEEA WINKGKDDKG 540 IS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MLRLNSFVIM SSMVYKRPLV DEESYELACK HSRQLEYSNQ LASFVDIVPY NDMLQKPQSS  60
VGEGDLSKSE CKERLNVTIT ELSAGANEDF ETTVPVSASS LSWVTSSTSE EDSRSEAVVR  120
VSFSPDFSEP DFQARVLLHS EEVYSSFLDY PPRRLVSVGP DHQADIPAWG LQDNYCLGEP  180
TVEDDSDEKL MGNCVISMPD FEQSVCSSND FGYGRIDCSC PDRGSIRCVR QHVMEAREKL  240
RETLGQEKFV ELGFCDMGEE VASKWTEEDE QLFREVVFSN PASLGKNFWD NLSMVFPYRT  300
KKEIISYYFN VFMLRRRAEQ NRVDPMNIDS DNDEWQGSYY DGDEELGITE EDEDSVVESP  360
VGQDVLGYDQ EIHDEDFHED EDDGDEDEIS EHNDDSDLEA DRNCIGEGNE VSEACMGKSL  420
DCGFAIAAKL VEKNPQDGGE DHDVQDESCT SYECQTNSSS GLVDAGSVLQ ENKVEIGTSS  480
GGIGGGVENG YVMEPCDARV WDVGYFTGPK KDVEFLSTCN MIEEVFGEEA WINKGKDDKG  540
IS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259279.1	0.0	PREDICTED: uncharacterized protein LOC104598763
Refseq	XP_010259295.1	0.0	PREDICTED: uncharacterized protein LOC104598763
Refseq	XP_019053760.1	0.0	PREDICTED: uncharacterized protein LOC104598763
Refseq	XP_019053763.1	0.0	PREDICTED: uncharacterized protein LOC104598763
Refseq	XP_019053766.1	0.0	PREDICTED: uncharacterized protein LOC104598763
Refseq	XP_019053767.1	0.0	PREDICTED: uncharacterized protein LOC104598763
TrEMBL	A0A1U8Q595	0.0	A0A1U8Q595_NELNU; uncharacterized protein LOC104598763
STRING	XP_010259271.1	0.0	(Nelumbo nucifera)