PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000986-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 400aa MW: 44154.8 Da PI: 7.9738

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000986-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.3	9.9e-33	49	215	3	134
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas.nsssg........ 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ +++ +c ++s ++s+ n s++ NNU_000986-RA 49 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQMPPN-FCqYPHSMVVSQXvNTSHPslasfvda 143 79*************************************************************77777.888444444444413333377788988 PP TCP 89 .........................kaaksaakskksqksaasalnlakesr...............akarararertrekmrikn 134 + ++ + l+k+s+ ak ++ are +ek + NNU_000986-RA 144 nveyvkddtprsslskaefkigssvE--------------EEDQMVLSKSSSpywnnsisiippnkeAKCKEVARETATEKINWMR 215 89888888887555333333333321..............2223344444445566666666666667777778887666665544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-30	50	210	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.004	50	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MITNSREKDL QSKKEGNANE GKVSKGSSSS RQWSALKDPR IVRVSRSFGG KDRHSKVCTI 60 RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLDA AKHEIDELPP LQMPPNFCQY 120 PHSMVVSQXV NTSHPSLASF VDANVEYVKD DTPRSSLSKA EFKIGSSVEE EDQMVLSKSS 180 SPYWNNSISI IPPNKEAKCK EVARETATEK INWMRKNDEQ ETTQEATEGD QCAQGSGHTS 240 YPRANHASSL PAGLLNNSMP PYNSYYHWEP SAGLSLSHHT GSHGYSSQAE DPHNYNVISL 300 SSSSLSLPTG SHQLLVYPSG TTPSFLPPFV TTSLECDPRQ MNHFQMLSSS SQNQPTNSLI 360 TPSLYSINAS TRPFQLSINP KLLHSQNNNG NQPNKGGSGP

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MITNSREKDL QSKKEGNANE GKVSKGSSSS RQWSALKDPR IVRVSRSFGG KDRHSKVCTI  60
RGLRDRRVRL SVPTAIQLYD LQDRLGLNQP SKVVDWLLDA AKHEIDELPP LQMPPNFCQY  120
PHSMVVSQXV NTSHPSLASF VDANVEYVKD DTPRSSLSKA EFKIGSSVEE EDQMVLSKSS  180
SPYWNNSISI IPPNKEAKCK EVARETATEK INWMRKNDEQ ETTQEATEGD QCAQGSGHTS  240
YPRANHASSL PAGLLNNSMP PYNSYYHWEP SAGLSLSHHT GSHGYSSQAE DPHNYNVISL  300
SSSSLSLPTG SHQLLVYPSG TTPSFLPPFV TTSLECDPRQ MNHFQMLSSS SQNQPTNSLI  360
TPSLYSINAS TRPFQLSINP KLLHSQNNNG NQPNKGGSGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-18	55	109	1	55	Putative transcription factor PCF6
5zkt_B	5e-18	55	109	1	55	Putative transcription factor PCF6
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260174.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_010260177.1	0.0	PREDICTED: transcription factor TCP2-like
TrEMBL	A0A1U8A5K3	0.0	A0A1U8A5K3_NELNU; transcription factor TCP2-like
STRING	XP_010260168.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	1e-46	plastid transcription factor 1