PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001020-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 550aa MW: 60679.9 Da PI: 8.1716

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001020-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.8	1.3e-42	178	253	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gCe+dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+q NNU_001020-RA 178 CQVHGCEMDLSSSKDYHKRHKVCEAHSKTAKVIVNGVEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQ 253 **************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.5E-35	172	239	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.898	175	252	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.29E-40	176	255	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-32	178	251	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MESWSYGSEG KGFVLSDEVI SPTDALARSR KVFTGWDLKP SYNYESTMLA QSRAAVENQG 60 FMELGFPAAI KKPLPDNQIG GFLGGRTNSE REPSPSCVVT PKALFGEEEP CSRLSSSIME 120 SNTRDSSLID LKLGRLADYR DAQNGESSKE KPILSTVRSA VPAKRARTTS LNSQTPFCQV 180 HGCEMDLSSS KDYHKRHKVC EAHSKTAKVI VNGVEQRFCQ QCSRFHLLSE FDDGKRSCRK 240 RLAGHNERRR KPQLGSQSGS RFLGTPLSTK SSFIFPDIFP NGMLRPVKYE NSNWSRNIKL 300 EDEAAYSPQS ALPITDGNLH QKSLLPPYCM EKPYPSLHSN RIDTTPRSIF QENGSRYPHD 360 FAGSNSAPRS LFRNTSSGSE DFTVFDTAST IQGLSRVSDS GCALSLLSSQ SQNSSTHSSG 420 IPMARPLIIQ GSRSQYSVGQ LPEKFLGVTS QASTIIASTR FSSSEMNSLD VDQIEPVLVS 480 DPSNAVNFEV RTDGIFQGPD FMVAKDSFSH GHSSTVGLLQ LSSQLQRVEH QRHSLQVKQE 540 NDVFCCLPIN

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MESWSYGSEG KGFVLSDEVI SPTDALARSR KVFTGWDLKP SYNYESTMLA QSRAAVENQG  60
FMELGFPAAI KKPLPDNQIG GFLGGRTNSE REPSPSCVVT PKALFGEEEP CSRLSSSIME  120
SNTRDSSLID LKLGRLADYR DAQNGESSKE KPILSTVRSA VPAKRARTTS LNSQTPFCQV  180
HGCEMDLSSS KDYHKRHKVC EAHSKTAKVI VNGVEQRFCQ QCSRFHLLSE FDDGKRSCRK  240
RLAGHNERRR KPQLGSQSGS RFLGTPLSTK SSFIFPDIFP NGMLRPVKYE NSNWSRNIKL  300
EDEAAYSPQS ALPITDGNLH QKSLLPPYCM EKPYPSLHSN RIDTTPRSIF QENGSRYPHD  360
FAGSNSAPRS LFRNTSSGSE DFTVFDTAST IQGLSRVSDS GCALSLLSSQ SQNSSTHSSG  420
IPMARPLIIQ GSRSQYSVGQ LPEKFLGVTS QASTIIASTR FSSSEMNSLD VDQIEPVLVS  480
DPSNAVNFEV RTDGIFQGPD FMVAKDSFSH GHSSTVGLLQ LSSQLQRVEH QRHSLQVKQE  540
NDVFCCLPIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-29	169	251	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053921.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
TrEMBL	A0A1U8Q7B0	0.0	A0A1U8Q7B0_NELNU; squamosa promoter-binding-like protein 6 isoform X2
STRING	XP_010260726.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-55	SBP family protein