PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001022-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 79aa MW: 9079.72 Da PI: 9.9621

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001022-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	103.3	8.6e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s NNU_001022-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.515	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.71E-39	2	61	No hit	No description
SuperFamily	SSF55455	2.09E-31	2	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-34	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.3E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SRYALLCLSA VCFDVEKFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	5e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	5e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	5e-20	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028059218.1	6e-39	MADS-box protein EJ2-like
Swissprot	O04067	7e-37	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	A0A426X9J1	3e-37	A0A426X9J1_ENSVE; Uncharacterized protein (Fragment)
STRING	cassava4.1_030388m	3e-37	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-39	MIKC_MADS family protein

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]