PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001052-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 733aa    MW: 81504.6 Da    PI: 7.2599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001052-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.3e-064544822355
                    HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  NNU_001052-RA 454 LRDLIPQS----DQKRDKASFLLEVIEYIQFLQ 482
                    9******9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-8453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-5454485No hitNo description
Gene3DG3DSA:4.10.280.102.4E-11454501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MFSRFSDTFV LHVAELTVIQ VKAIICLTDF LENFGELKVS ISASGVPENS LYKRLLGMRR  60
GESWQKTLQL TVLYYERMRF PDRRSECASD LQSESLLLSG LDPWICYGSE KLLENYRFFC  120
LSNSALKFIR SISERLEVWT FTLRDFQVEI HLWTSKYYLF DRIRSSCRNS STGVKLTNKV  180
ESLKFYGRKK EKKGNISHFQ MELPQPRPFG TEGKKPTHDF LSLYSHSSFQ NQDPRPPHGV  240
FLKTHDFLKP LESVEMNSGK GENTVETAPP PSSVEHALPG GIGTYSISHI SNFKNESVSK  300
LKTSVYNVAR ASIADRDGEA NKATPNPKST SHSGGTFALW NESVVKEKGA MVQNSAAGEI  360
QVLKEPAEKV GQWSSERQLQ TPFIHSNSFS SQSSSKHSGQ KTQSFVGMMK SAKGHQEEEE  420
DDEEEFISKR DAPSQKGDLT VKVDGKSTDQ KPILRDLIPQ SDQKRDKASF LLEVIEYIQF  480
LQEKVNKYET AFPGWNQEPT KLVPWRNIRR PGETMIDHSQ VLKNGPGPGL MFDNNIAITP  540
PMLANAQNAV DADLRAGGAN KIMDHHAGLT NKGVPMPISF QPNMLTPVVR GAVLAQPSQR  600
PFSDADNMAS QQQTQLWQSR TCTTDCPATS DTVNEQEEVT IEEGTISISS AYSQGLLNNL  660
TQALQCSGVD LSQASISVQI DLGKRAVSRL AGMTSSAKDQ EDCTGNQAVS HSKGASSGED  720
SDQASKRLKT ERS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053981.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_019053984.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_019053986.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A1U8Q7G40.0A0A1U8Q7G4_NELNU; transcription factor BIM2 isoform X1
STRINGXP_010257912.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.42e-70bHLH family protein