PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001071-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 542aa MW: 58260.8 Da PI: 5.631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001071-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	358	406	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq NNU_001071-RA 358 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 406 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.09E-11	353	410	No hit	No description
SuperFamily	SSF47459	7.2E-17	353	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	355	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-16	356	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	358	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	361	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MDMGDKDKFG LEKGSGDPVN YHSSNMSTDW RFGGANISNQ SMGLVPTDNS IPVRKGDLMG 60 SSVSLVNSFC PTIWDHPNSL NLGFCDSNAQ TGTNTSNTVA IRKGIPVCSS TSIDKALDIG 120 WNPTISKGGV FLQSNTGIIP QSLSQFPADA DFIERAARFS CFNAGNFSDM MNPFSIPQTL 180 VPYSKGGTVQ APIQNNEMHL PEAAKEVTPS ADHGATEGNP IENERQTGNF MRHPDEEKQG 240 IGVSSNESDE ADFSGSGDGQ GDPSMLESAG GDPSSSKGIS IKKRKRSGQD NELDQVKGAQ 300 VPGEGAKDNT ETKQKGDQNL TSATAKPAGK HGKDSSQPSD APKEDYIHVR ARRGQATNSH 360 SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLAAVN 420 PRLDFNIEGF LAKDILQARG GSSTMGFSPD MGMSHPQLHP SQQGLIQAGI PGMGSPSDAL 480 RRTINSQLTA MSGGYKEPTQ LPNMWVDDEL HNVVQMNYGA SVPFNNQELN GSLPPGHMKV 540 EL

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MDMGDKDKFG LEKGSGDPVN YHSSNMSTDW RFGGANISNQ SMGLVPTDNS IPVRKGDLMG  60
SSVSLVNSFC PTIWDHPNSL NLGFCDSNAQ TGTNTSNTVA IRKGIPVCSS TSIDKALDIG  120
WNPTISKGGV FLQSNTGIIP QSLSQFPADA DFIERAARFS CFNAGNFSDM MNPFSIPQTL  180
VPYSKGGTVQ APIQNNEMHL PEAAKEVTPS ADHGATEGNP IENERQTGNF MRHPDEEKQG  240
IGVSSNESDE ADFSGSGDGQ GDPSMLESAG GDPSSSKGIS IKKRKRSGQD NELDQVKGAQ  300
VPGEGAKDNT ETKQKGDQNL TSATAKPAGK HGKDSSQPSD APKEDYIHVR ARRGQATNSH  360
SLAERVRREK ISERMKFLQD LVPGCSKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLAAVN  420
PRLDFNIEGF LAKDILQARG GSSTMGFSPD MGMSHPQLHP SQQGLIQAGI PGMGSPSDAL  480
RRTINSQLTA MSGGYKEPTQ LPNMWVDDEL HNVVQMNYGA SVPFNNQELN GSLPPGHMKV  540
EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	286	KKRKRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261471.1	0.0	PREDICTED: transcription factor bHLH49
Refseq	XP_010261481.1	0.0	PREDICTED: transcription factor bHLH49
TrEMBL	A0A1U8A8P0	0.0	A0A1U8A8P0_NELNU; transcription factor bHLH49
STRING	XP_010261463.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-105	bHLH family protein