PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001074-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 159aa    MW: 18628 Da    PI: 8.2697
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001074-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15e-1584142563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ ++  +++ +e+
  NNU_001074-RA  84 RKQRRMISNRESARRSRMRKQKHLDELWSQVIRLRTENRQLIDKLNHVSECHDQVLQEN 142
                    79**********************************************99999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-1680144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.74982145IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.42E-1384133No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-1384157No hitNo description
PfamPF001709.7E-1384142IPR004827Basic-leucine zipper domain
CDDcd147024.78E-1885136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQPGEVAGLQ YMAPMDPNPY TAHFNFSMMQ NNMPAFHFSR LLRPPPNPQN LPSVHDFTAQ  60
SSCLSNNSTS DEADEQQLRI IDERKQRRMI SNRESARRSR MRKQKHLDEL WSQVIRLRTE  120
NRQLIDKLNH VSECHDQVLQ ENARLREEAS DLRQMLSGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257863.19e-81PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC26e-34BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1U7ZZN92e-79A0A1U7ZZN9_NELNU; basic leucine zipper 43-like
STRINGXP_010257863.14e-80(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]