PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001121-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 256aa    MW: 28848.1 Da    PI: 7.8505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001121-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-1654102355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  NNU_001121-RA  54 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAAMAYDNAARLLRG 102
                    67******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-2853110IPR001471AP2/ERF domain
PROSITE profilePS5103219.87553110IPR001471AP2/ERF domain
SMARTSM003809.2E-3653116IPR001471AP2/ERF domain
CDDcd000181.70E-3053112No hitNo description
SuperFamilySSF541719.81E-2054111IPR016177DNA-binding domain
PRINTSPR003676.7E-75465IPR001471AP2/ERF domain
PfamPF008475.2E-1056102IPR001471AP2/ERF domain
PRINTSPR003676.7E-77692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDSIESPTSS SYHTQVPCRD HESEPDETEN FQESQVKIRG SALPIKASGS GRRFLGVRQR  60
PSGRWVAEIK DSSQKLRLWL GTFDRAEEAA MAYDNAARLL RGRNARTNFP YHENMKIHER  120
NYSLLRKNPR FSQLLQRAIM KNHWKFSSAS TSTHQKQGFE SGSIDVNSIV EETIVCSSSP  180
EKGLKCYGSQ ERDGLCGFSF RGCKVYSSVI VSPSFSASQC DQAEVQAEER KYEGTQSLEP  240
LFVHATGFLE SGFVQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15531151477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262228.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like
TrEMBLA0A1U8AAI00.0A0A1U8AAI0_NELNU; ethylene-responsive transcription factor ERF110-like
STRINGXP_010262228.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11