PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001170-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 350aa MW: 38862.9 Da PI: 6.6517

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001170-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	167	213	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L NNU_001170-RA 167 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 213 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	164	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-11	167	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-15	168	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-15	168	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.03E-5	177	216	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.7E-4	249	300	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MVAKKEEDQG DCSQTIQSIQ GKQEQLFIQH QQQQLQQHHQ QQYSDGYEGG VAGRGGGLLL 60 PELSPIIPWS LPPIHTFNPV HQFSTNPVRD HDPFLVPPPL PYGGLFGRRA SALQFAYDGP 120 SSDHLRLISD PHGPVVQPGS SPFGIQAELG KMTAQEIMDA KALAASKSHS EAERRRRERI 180 NNHLAKLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTSQI AEVSPVPTEV DELTVDASDE 240 DGKLIIKASL CCEDRSDLLP ELIKTLKALR LRTVKAEITT LGGRVKNVLF ITGEEESKDN 300 EQQQQQQQYT ISSIQEALKA VMERTAGDES ASGCIKRQRT NINMLEHRSL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MVAKKEEDQG DCSQTIQSIQ GKQEQLFIQH QQQQLQQHHQ QQYSDGYEGG VAGRGGGLLL  60
PELSPIIPWS LPPIHTFNPV HQFSTNPVRD HDPFLVPPPL PYGGLFGRRA SALQFAYDGP  120
SSDHLRLISD PHGPVVQPGS SPFGIQAELG KMTAQEIMDA KALAASKSHS EAERRRRERI  180
NNHLAKLRSL LPNTTKTDKA SLLAEVIQHV KELKRQTSQI AEVSPVPTEV DELTVDASDE  240
DGKLIIKASL CCEDRSDLLP ELIKTLKALR LRTVKAEITT LGGRVKNVLF ITGEEESKDN  300
EQQQQQQQYT ISSIQEALKA VMERTAGDES ASGCIKRQRT NINMLEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	177	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262767.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-101	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A1U8AKE1	0.0	A0A1U8AKE1_NELNU; transcription factor bHLH30-like
STRING	XP_010262767.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]