PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001186-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family RAV
Protein Properties Length: 365aa    MW: 40720.8 Da    PI: 9.4062
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001186-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-1460108155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  NNU_001186-RA  60 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 108
                    78****9888.8*********3.....5*************************98 PP
2B3101.93.6e-32192291196
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    f+k+ tpsdv+k++rlv+pk++ae+h     g++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   +++l
  NNU_001186-RA 192 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqIGSTSKGVLLNFEDNGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVSFQRSTGPDKQL 287
                    89***************************95566799**************************************************876677777 PP

                    EEEE CS
             B3  93 vvkv 96 
                    ++ +
  NNU_001186-RA 288 FIDW 291
                    7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-2660115No hitNo description
SuperFamilySSF541719.81E-1860116IPR016177DNA-binding domain
PfamPF008475.6E-961108IPR001471AP2/ERF domain
SMARTSM003801.2E-3061122IPR001471AP2/ERF domain
PROSITE profilePS5103220.52161116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2161116IPR001471AP2/ERF domain
PRINTSPR003674.5E-56273IPR001471AP2/ERF domain
PRINTSPR003674.5E-58298IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.1E-42182299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-30190292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-27191280No hitNo description
PfamPF023628.6E-29192291IPR003340B3 DNA binding domain
SMARTSM010191.6E-24192295IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41192294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDGSCIDESS SNSISVSPAP VSSLPEKKET ERLCRMGSGA SVVIDSDSGV EAESRKLPSS  60
QYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEEEAARAYD IAAQRFRGRD AVTNFKPLSE  120
TDEDDIETIF LNSHSKAEIV DMLRKHTYND ELEQSKRNYG RNGDVSKRNR GGGCFGDSGG  180
SDRAAKAREL LFDKAVTPSD VGKLNRLVIP KQHAEKHFPL QIGSTSKGVL LNFEDNGGKV  240
WRFRYSYWNS SQSYVLTKGW SRFVKEKNLK AGDVVSFQRS TGPDKQLFID WKPRAASTYM  300
ALPQLVHPLN PAAQPVEVVR LFGVNIFKIP VSSVVNSWNG KRLRDVDEFS SLEPCSKKQR  360
VLGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-5618929711120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262942.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-148RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1U8AK510.0A0A1U8AK51_NELNU; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_010262942.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-144related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]