PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001189-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 283aa    MW: 31556.1 Da    PI: 7.5722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001189-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05117136120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  n++ H+
  NNU_001189-RA 117 FSCSVCNKTFNRYNNMQMHM 136
                    89*****************9 PP
2zf-C2H213.30.00024202224123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  NNU_001189-RA 202 FGCRKCGKAFAVRGDWRTHEKNC 224
                    56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-5113139No hitNo description
PROSITE profilePS5015710.429117144IPR007087Zinc finger, C2H2
SMARTSM003550.071117139IPR015880Zinc finger, C2H2-like
PfamPF128747.2E-5117136No hitNo description
Gene3DG3DSA:3.30.160.604.2E-6117136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SMARTSM00355180165197IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.39E-6187222No hitNo description
Gene3DG3DSA:3.30.160.607.7E-6188222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035597202222IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPTPSLSHFS TETTESTCLE ANEEDEESVL LTLRPPGQHI SKVVSLSRRH HHHQYSSDQA  60
ESGFVNHSSE ESVTVALHIG PPSVGISTSN GINNGAPVEG QYWIPSPAQI LVGPTQFSCS  120
VCNKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKPASSML RLPCYCCAEG CKNNIEHPRS  180
KPLKDFRTLQ THYKRKHGAK PFGCRKCGKA FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR  240
SLKDHIRAFG GGHAPHGVEF CEDEDDDEND EDNGNGGHVS AYY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262985.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1U8A8L90.0A0A1U8A8L9_NELNU; zinc finger protein WIP6-like
STRINGXP_010262985.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-122C2H2-like zinc finger protein