PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001227-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 345aa    MW: 38297.4 Da    PI: 5.1983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001227-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-20124172153
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                    s+y+GVr+++ +g+W+AeIrdp    +r  r++lg++gtaeeAa+a++aa +kl
  NNU_001227-RA 124 SKYRGVRQRR-WGKWAAEIRDP----IRgVRVWLGTYGTAEEAAEAYEAASRKL 172
                    89*****998.**********7....246*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-13124172IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-17124172IPR016177DNA-binding domain
CDDcd000185.43E-18124157No hitNo description
SMARTSM003801.4E-23125194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-23125173IPR001471AP2/ERF domain
PROSITE profilePS5103220.06125187IPR001471AP2/ERF domain
PRINTSPR003672.5E-10126137IPR001471AP2/ERF domain
PRINTSPR003672.5E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPGPQRPLLN QDKVCKKQKK KPCLISGLED VETKTMRKIR VIYCDPDATD SSSSEDEAGM  60
KRNGRVRCKR LIREIRVPAA QFQSSFAETE SSSQDSNNGG KTLNKTGKNP GRRVLSKTSR  120
SGSSKYRGVR QRRWGKWAAE IRDPIRGVRV WLGTYGTAEE AAEAYEAASR KLQLESVSHA  180
QKASNNTSSS SAAGSMSQSC VSEDSESLFS HSSPSSVLDV STAVSHVFGP GTQTKEDKHS  240
TRNLELQQPH QRQSEEQNQQ AISDFLEDSL PVITSPMVED LELGFQLDSF LVNDFGQAFE  300
DFCDFSDIPL CRFEDRDPSE LPNFDFDLST EELAWIDEPL GVACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-14126173351ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263592.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A1U8ADM00.0A0A1U8ADM0_NELNU; ethylene-responsive transcription factor ERF119-like
STRINGXP_010263592.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-16ERF family protein