PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001240-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 302aa MW: 33212.4 Da PI: 7.5015

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001240-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.5	6.6e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ l+q++ NNU_001240-RA 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWPLCQAA 99 6********************************************************************************************* PP DUF260 92 aelallkee 100 +e++l +++ NNU_001240-RA 100 VEAVLKGNP 108 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	1.2E-92	1	300	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.012	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWPLCQAAV EAVLKGNPIT QIASEAAVSP 120 SPPMKAYDIR HVSKDENWAA SQDLHKVKSR SRFKRSASKP NKPKLVSTAD LVVSEPPVAD 180 ATPVCNLRWR RCYPDGFERA TSHESSGSHH SEHNGEGDSR ETDSMFSVET VEHSLVSRPQ 240 QQEAALKTSD SHTDDNEVEL ELTLGFEPVS RHPSASPVKG RSDLHVSGND TCKMELGLDY 300 VA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263769.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	4e-93	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U8AE09	0.0	A0A1U8AE09_NELNU; LOB domain-containing protein 41-like
STRING	XP_010263769.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-85	LOB domain-containing protein 41