PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001267-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 275aa    MW: 30122.8 Da    PI: 5.2003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001267-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08173220455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L+ l+P +     k +  a +L + ++Y++sLq
  NNU_001267-RA 173 SHSLAERVRREKINDRLRCLQGLVPGC----YKTMGMAVMLDEIINYVQSLQ 220
                    8*************************9....35599999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16167237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.73E-11167224No hitNo description
Gene3DG3DSA:4.10.280.106.7E-16169231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.415169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5173220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAEFAGELQS FKPSFPFLEF DSNMELLNQI AELNPTAFLN PSLNLQSFMG FSGDISFAQQ  60
QPEFSMSFAD ETTGLLYQGS PNALPAVVQP AASVGDVVVH ESKIQKATAA SESSSGITSS  120
ATVSETGLGG DTHQIKRKSS LGRGKRKRNN EKEGEKPKDV IHVRARRGQA TDSHSLAERV  180
RREKINDRLR CLQGLVPGCY KTMGMAVMLD EIINYVQSLQ NQVEFLSMKL SAASSFYDFN  240
SEVEGANAYE AQEIERLMRE GYGGGLTCSQ STWPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264190.10.0PREDICTED: transcription factor bHLH75-like
TrEMBLA0A1U8AF220.0A0A1U8AF22_NELNU; transcription factor bHLH75-like
STRINGXP_010264190.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-54BR enhanced expression 1