PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001408-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRF
Protein Properties Length: 243aa    MW: 25648.7 Da    PI: 8.9244
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001408-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.1e-2396140145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    ++epgrCrRtDGKkWRC ++v++++k+CErH+hrgr+ srk++e+
  NNU_001408-RA  96 EPEPGRCRRTDGKKWRCTKDVVPDQKYCERHMHRGRKCSRKHVEA 140
                    69*****************************************97 PP
2QLQ58.32.3e-202661237
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    FT  Qlq+L++Q+l++Ky++a++PvP +L+++i+k
  NNU_001408-RA 26 GFTFLQLQELEHQALIFKYMVAGVPVPVHLVLPIWK 61
                   69********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-92561IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.7752661IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-142760IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.08796140IPR014977WRC domain
PfamPF088792.2E-1997139IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGAGSPSVGL GLGLGLGPGL SHGKSGFTFL QLQELEHQAL IFKYMVAGVP VPVHLVLPIW  60
KSVVSSYGGV NGGIYQHYPS FLGCTSLCLD YRNSMEPEPG RCRRTDGKKW RCTKDVVPDQ  120
KYCERHMHRG RKCSRKHVEA SQGGATPPCA AAAASSVNAT TSKTNNDSLN SNTNLSISIP  180
ANLELTTTTT TTNTNTNNNN DVSGSNTSNN ISNSNAGINV SPSLGFSPKS VLQSGTCKTD  240
SSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276023.11e-180PREDICTED: growth-regulating factor 10
SwissprotQ6AWX73e-53GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A1U8BHC91e-179A0A1U8BHC9_NELNU; growth-regulating factor 10
STRINGXP_010276023.11e-179(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-32growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]