PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001430-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 208aa    MW: 22284.4 Da    PI: 5.6046
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001430-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.31.7e-40181191101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA ar+rdPvyG+vg+i++lqqq+ +l+aela
  NNU_001430-RA  18 PCGACKFLRRKCVKGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLLRIPVHKRLDAVVTICYEAFARIRDPVYGCVGHIFALQQQVVNLQAELA 113
                    7***********************9989******************************************************************** PP

         DUF260  96 llkeel 101
                     +k++l
  NNU_001430-RA 114 FIKAQL 119
                    999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.39517119IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3918116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSGISVNSNG SGGGGGGPCG ACKFLRRKCV KGCIFAPYFD SEQGASHFAA VHKVFGASNV  60
SKLLLRIPVH KRLDAVVTIC YEAFARIRDP VYGCVGHIFA LQQQVVNLQA ELAFIKAQLT  120
TMELPQSLSP SQSSASASLG VSSDLIPTSL ESMCFDPDPL QLQEIVEMAD CWNQCDDQNS  180
NNGDLSALAQ EFVSIYLPGV RFRPSDSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39141127104LOB family transfactor Ramosa2.1
5ly0_B2e-39141127104LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276387.11e-153PREDICTED: LOB domain-containing protein 19-like
SwissprotO813227e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U8B6371e-152A0A1U8B637_NELNU; LOB domain-containing protein 19-like
STRINGXP_010276387.11e-152(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-63LOB domain-containing protein 19