PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001560-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 681aa    MW: 76832.5 Da    PI: 5.8703
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001560-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444.1e-14476522455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  NNU_001560-RA 476 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 522
                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625472521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-19474539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11476521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-19476539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-14476526No hitNo description
SMARTSM003531.4E-17478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAAPVSNRLQ QMLKSAVQSV QWTYSLFWRI CPQQGILVWG DGYYNGQIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS GSETNQPARR PSAALSPEDL TETEWFYLMC VSFSFAPGVE  120
LPGKAFARRH HVWLSGANEV DSKVFSRSIL AKSARIQTVI CIPLMDGVVE FGTTERVQED  180
LRLVQQVKSF FVEHHNPPKP ALSEHSTSNP ATSVDRPQFD SSPPLPAVYT IADPPANVNE  240
NDEEEEEDEE DEEEDEVESD SEAQTGRGSH PNAAQHPRRI CPPINQGGTP AQAAAEPSEL  300
MQLEMSEDIR MGSPDDGSNN LESDVHILGA SQSGGQEDHQ RRGDSYRAES ARRWPQSKQD  360
QLGNAPQMDE SAQEDSHYSQ TVSTIIQRNS SRWLESSSVG PVGYSAHSAF SKWNCRNDHL  420
LHLRLEGTSQ WLLKYILFTV PFLHNKYRDE NSPKSRDGDS AARFRKGTPQ DELSANHVLA  480
ERRRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRKKIQDLES RNRQMESDQR  540
PRNEDTQKTS SSKEQWSVHG NSGITLPERS RGFAGSDKRK LRIVEGAGGR RPSRMVGNTV  600
EVSIIESDAL LELQCPYRDG LLIDIMQMLR ELRFEITAVH SSSTNGIFNA ELRAKVKENV  660
NEKKPSIAEV KRAIHQIINE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-23819112192Transcription factor MYC3
4rqw_B2e-23819112192Transcription factor MYC3
4rs9_A2e-23819112192Transcription factor MYC3
4yz6_A2e-23819112192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1480485ERRRRE
2481486RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278097.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1U8BA630.0A0A1U8BA63_NELNU; basic helix-loop-helix protein A-like isoform X1
STRINGXP_010278097.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-98bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]