PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001675-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 767aa    MW: 85476.8 Da    PI: 8.041
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001675-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.41.8e-25185286199
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k+lt sd++++g +++ k++a+e+     ++k++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+a++L +gD+++F   + +++e
  NNU_001675-RA 185 FCKILTASDTSTHGGFSVLKRHADEClppldMSKQPPSQELVAKDLQGVEWRFRHIYRGQPKRHLLTSGWSTFVSAKRLVAGDTFIFL--RGESGE 278
                    99*****************************55556678*************************************************..449999 PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    l+v+v+r+
  NNU_001675-RA 279 LRVGVRRA 286
                    *****996 PP
2Auxin_resp110.31.9e-36311393183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha+st+++F+v+Y+Pr+ +seF+++++++++++++  s+GmRf+m++e+e+++e+rl+Gtvvg++d+dpv+Wp+SkWr+Lk
  NNU_001675-RA 311 ASHAISTGTMFSVYYRPRTNPSEFIIPCDQYMTSVSNLHSIGMRFRMKIESEECPEQRLAGTVVGIEDADPVSWPGSKWRCLK 393
                    789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-39178314IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-39180298IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21184285No hitNo description
PfamPF023626.7E-23185286IPR003340B3 DNA binding domain
SMARTSM010191.0E-23185287IPR003340B3 DNA binding domain
PROSITE profilePS5086312.506185287IPR003340B3 DNA binding domain
PfamPF065072.2E-33311393IPR010525Auxin response factor
PfamPF023092.3E-6660752IPR033389AUX/IAA domain
PROSITE profilePS5174518.279672754IPR000270PB1 domain
SuperFamilySSF542771.75E-6674748No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
VKVCCLKGLK FRGSSFISLL HFVSFFRTVR TLLISHRERG REGMGSAIVG EQLNLEGRYE  60
DSSSNKRDMG STRKEEKDQL YWELWHACAG PLVTVPRIGE LVFYFPQGHI EQVEAFTTND  120
RTMPLPIYSL PSKILCRVVN VELKAEVETD EVYAQVTLLP ETKESSSLDK GNFESFPRRP  180
QVYSFCKILT ASDTSTHGGF SVLKRHADEC LPPLDMSKQP PSQELVAKDL QGVEWRFRHI  240
YRGQPKRHLL TSGWSTFVSA KRLVAGDTFI FLRGESGELR VGVRRAMKLQ NNTSTSVISG  300
HSMQLGILAT ASHAISTGTM FSVYYRPRTN PSEFIIPCDQ YMTSVSNLHS IGMRFRMKIE  360
SEECPEQRLA GTVVGIEDAD PVSWPGSKWR CLKVQWDETP TTVVLPDRVS PWKIESFEAS  420
DMRQLSFLPQ SKRMRTLRSA PLESSTMVVA DGLSQRSIKH APAQGQSGVL QGQEIGAXSA  480
HRLGSIQNAS LLHLVTPTSS DKVQAQMSLE NNLSLPMHDP LYLYPGNALP IPNGISQDSG  540
LNGYWPTPFS LYVSGNCSFS DVGSQSSGFQ GKRAPDPGEV FEMPSTQPKR SGTCMLFGVN  600
LTKNPMEHLS SHTMVPGVVW HPSPVPMVAS QSGTSDSVQL SEPSKNMKSS NSSESGGLVE  660
KPCKSCCSVT TRSCTKVHKY GTALGRSVDL TRFNGYDELV HELDRMFEFN GKLKDQSNGW  720
EVVYTDNEGY TMLMGDTSWL EFRSXVRKML ICPKEEVDEL RRSMKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1517841517353Auxin response factor 1
4ldw_A1e-1517841517353Auxin response factor 1
4ldw_B1e-1517841517353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240998.10.0PREDICTED: auxin response factor 23-like
RefseqXP_010241005.10.0PREDICTED: auxin response factor 23-like
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLA0A1U7Z2W90.0A0A1U7Z2W9_NELNU; Auxin response factor
STRINGXP_010240998.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]