PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001698-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CO-like
Protein Properties Length: 413aa    MW: 46085.6 Da    PI: 5.4472
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001698-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-054283540
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    C+ ++e ++ ++C+ +   lC +C    H+g      H+++
  NNU_001698-RA 42 LCDFCGELRALIYCRADTAKLCISCDHDVHSGnplfgkHSRS 83
                   6******99*********************888888888765 PP
2zf-B_box27.94.9e-0982127242
       zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 
                    + + C+ + +++++++C + +  lC++C   +H g     H+++pl
  NNU_001698-RA  82 RSQLCDACASNPASIYCSTENLVLCQNCDWDSHGGssstlHDRRPL 127
                    5689*****************************6699999998875 PP
3CCT59.21.4e-20369409343
            CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      ++RYkeK+k R+++K+irYesRK++AesR R+KGrF+k 
  NNU_001698-RA 369 SVISRYKEKKKARRYDKHIRYESRKVRAESRTRIKGRFAKV 409
                    5689***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.6983885IPR000315B-box-type zinc finger
SMARTSM003361.3E-63885IPR000315B-box-type zinc finger
CDDcd000212.21E-54273No hitNo description
PROSITE profilePS5011910.40981127IPR000315B-box-type zinc finger
PfamPF006431.0E-583126IPR000315B-box-type zinc finger
CDDcd000214.68E-685127No hitNo description
SMARTSM003362.886127IPR000315B-box-type zinc finger
PROSITE profilePS5101714.307367409IPR010402CCT domain
PfamPF062035.5E-15368409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAEFIRDPQS PEEEQEQPIN VKGKEDDEQR QQQQNRETQK CLCDFCGELR ALIYCRADTA  60
KLCISCDHDV HSGNPLFGKH SRSQLCDACA SNPASIYCST ENLVLCQNCD WDSHGGSSST  120
LHDRRPLEGF SGCPSAIELS SILGFEDVGY KSLLLREDDP EGNSFVSVHY GSMGDKLTDD  180
LAWDTSVVSL DNLIVSTNLS QNFQAIGIPP PPKNRKTACG KHKEEMLHQL CKLAKLESLS  240
SMNIEPGEIE SLLGLETPIL EQNLQSGYMH TGIEHNTGIT LLSGYDASVL QWHGDCGEPA  300
DQVPISLTYS ENHLEESLLV LGKPTEDCGT VSHANAGYKE QSQCPIVTES LPILARTFQH  360
ELTRIDRGSV ISRYKEKKKA RRYDKHIRYE SRKVRAESRT RIKGRFAKVD NIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241314.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1U7Z2870.0A0A1U7Z287_NELNU; zinc finger protein CONSTANS-LIKE 13
STRINGXP_010241314.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-83B-box type zinc finger protein with CCT domain