PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001699-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 207aa MW: 22900.5 Da PI: 7.0473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001699-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	50	100	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ +++Er RR ++ +++L++++P++ K + + i e+++ YIk+L+ NNU_001699-RA 50 KRKPSPQIERDRRVQMSGLYATLQSMIPNL----LHKATRVKIIEETIAYIKELE 100 5777899********************5....48**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.06E-7	48	97	No hit	No description
PROSITE profile	PS50888	13.033	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-12	49	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.29E-12	49	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-6	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.5E-4	141	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEGNHEDKDV SKLLLKLMEG YSDAAIAPLS EFSPSKEITI NAEAASCSRK RKPSPQIERD 60 RRVQMSGLYA TLQSMIPNLL HKATRVKIIE ETIAYIKELE ECLEELKRRK AAAIRALRLC 120 NHPNASSSVD VTVSGNVAFF EVSAMVRRGL VKEIFGVFDK HRVEVLAAGV AVHELELRLT 180 VTALIDGNGD DVGAAERIKT DLLTLLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021290379.1	3e-48	transcription factor TT8-like
TrEMBL	A0A061EPZ0	4e-45	A0A061EPZ0_THECC; Uncharacterized protein
STRING	XP_010245381.1	4e-76	(Nelumbo nucifera)