PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001734-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 1190aa MW: 133282 Da PI: 9.1398

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001734-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	50	86	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W+ eE ++++a +++G++ Wk++a + +R+ +++ NNU_001734-RA 50 QWSREELIRFYEAYRKYGKD-WKKVAGIVR-NRSVEMVE 86 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.36E-10	45	94	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-4	47	95	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-4	50	87	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-7	50	90	IPR001005	SANT/Myb domain
CDD	cd00167	3.38E-5	51	85	No hit	No description
Pfam	PF06584	4.3E-33	666	766	IPR033471	DIRP domain
SMART	SM01135	4.8E-58	666	767	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1190 aa Download sequence Send to blast
MIVYMAPPRK SRSVNKRFPN VNEESPDKDR GNANKSRQRK RTLSDMLGPQ WSREELIRFY 60 EAYRKYGKDW KKVAGIVRNR SVEMVEALYN MNRAYLSLPE GTASVVGLIA MMTDHYNVLE 120 GNDSERESND VSETSRKPQK RGRGKVRDNV SKGSDRYLSD LLHSQSASSY GCLSLLKKRR 180 SGGSRPWAVG KRTPRFPVSH SYDKDDREKH VSSNKRGMKP EIDANDDEVA HEVALALAEA 240 SQRGGSPQVS QTPNRRESMR PSPVQNGERM HAESEMASAR LTGTGMDEDG LEDSLGSKEA 300 ENGDFSRDTG NQIDAEGAGT IEVQWQQKKF HGRKLKVEEV ETNHFDDIRE ACSGTEEGIS 360 LGTVKGRAET EVTDAKIQRS SPQRPRKRSR QLFFGDESSA LDALQTLADL SLMMPSSTIE 420 NEPHVKFKKE KRALDVEKSS APEAMPLKEQ RDKSKMSATK EKGHQSVAAV GVVGAKSAKL 480 GRDSAVDDSV VTETKQRPFQ SSPKMRNRKR KSLATKSPKS EGHSDSYPSE LQKTEALMEE 540 GKKSVTKGKR TNQSTLLPKH GKLVKPSERS SSSTDQPRAE TESAVSMIQV QPADQVNLPT 600 KLRSRRKINL PKSFISKELK SSDSSGKDRP NMYSLSLHDK TLDFKEMLSH CLSSPMLRRW 660 CVFEWFYSAI DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRLSEQFLKE 720 EKEKLEQYRE SVRTHYAELR AGTREGLPTD LARPLSVGQR VIACHPKTRE IHDGSVLTVD 780 RNRCRVQFDR PELGVEFVMD IDCMPSNPME IMPEFLRKQT AEVEIFSENI NEPKMIRSKD 840 LKNGCCMKFA PCENMEIVDC SSQISSATYP MNTLLKQAKE DTINSISQAK AAASEMINAQ 900 HARYTQPFTL AQVQAKEADI RALSELTRAL DKKEALLLEL RHMNDEVLEN QKGGDNSLKD 960 SDPFKKQYAT VSSALLYLRQ RNTYHGNSPL PWMKPQPSSG GPIGPSSFDH TEFFPQESGS 1020 HVAEIVENSR LKAQAMVHTA IQVMFSLKEG KNAFARIGEA LDSANNRHFK ADSVASAIRD 1080 PANGGLTYQD HPTSCISEPT TTVPASDLKL NISDSNESQI PSELISSCVA TLLMIQTCTE 1140 RQYPPAEVAQ IIDSAVKSLQ PCCSQNLPIY GEIRKCMGIV RNQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1190 aa Download sequence Send to blast

MIVYMAPPRK SRSVNKRFPN VNEESPDKDR GNANKSRQRK RTLSDMLGPQ WSREELIRFY  60
EAYRKYGKDW KKVAGIVRNR SVEMVEALYN MNRAYLSLPE GTASVVGLIA MMTDHYNVLE  120
GNDSERESND VSETSRKPQK RGRGKVRDNV SKGSDRYLSD LLHSQSASSY GCLSLLKKRR  180
SGGSRPWAVG KRTPRFPVSH SYDKDDREKH VSSNKRGMKP EIDANDDEVA HEVALALAEA  240
SQRGGSPQVS QTPNRRESMR PSPVQNGERM HAESEMASAR LTGTGMDEDG LEDSLGSKEA  300
ENGDFSRDTG NQIDAEGAGT IEVQWQQKKF HGRKLKVEEV ETNHFDDIRE ACSGTEEGIS  360
LGTVKGRAET EVTDAKIQRS SPQRPRKRSR QLFFGDESSA LDALQTLADL SLMMPSSTIE  420
NEPHVKFKKE KRALDVEKSS APEAMPLKEQ RDKSKMSATK EKGHQSVAAV GVVGAKSAKL  480
GRDSAVDDSV VTETKQRPFQ SSPKMRNRKR KSLATKSPKS EGHSDSYPSE LQKTEALMEE  540
GKKSVTKGKR TNQSTLLPKH GKLVKPSERS SSSTDQPRAE TESAVSMIQV QPADQVNLPT  600
KLRSRRKINL PKSFISKELK SSDSSGKDRP NMYSLSLHDK TLDFKEMLSH CLSSPMLRRW  660
CVFEWFYSAI DYPWFAKREF VEYLNHVGLG HIPRLTRVEW GVIRSSLGKP RRLSEQFLKE  720
EKEKLEQYRE SVRTHYAELR AGTREGLPTD LARPLSVGQR VIACHPKTRE IHDGSVLTVD  780
RNRCRVQFDR PELGVEFVMD IDCMPSNPME IMPEFLRKQT AEVEIFSENI NEPKMIRSKD  840
LKNGCCMKFA PCENMEIVDC SSQISSATYP MNTLLKQAKE DTINSISQAK AAASEMINAQ  900
HARYTQPFTL AQVQAKEADI RALSELTRAL DKKEALLLEL RHMNDEVLEN QKGGDNSLKD  960
SDPFKKQYAT VSSALLYLRQ RNTYHGNSPL PWMKPQPSSG GPIGPSSFDH TEFFPQESGS  1020
HVAEIVENSR LKAQAMVHTA IQVMFSLKEG KNAFARIGEA LDSANNRHFK ADSVASAIRD  1080
PANGGLTYQD HPTSCISEPT TTVPASDLKL NISDSNESQI PSELISSCVA TLLMIQTCTE  1140
RQYPPAEVAQ IIDSAVKSLQ PCCSQNLPIY GEIRKCMGIV RNQILALVPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241815.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBL	A0A1U7Z4V1	0.0	A0A1U7Z4V1_NELNU; protein ALWAYS EARLY 3-like isoform X1
STRING	XP_010241815.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding