PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001735-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 350aa MW: 37826.7 Da PI: 8.4507

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001735-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.4e-11	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+++H++ NNU_001735-RA 51 EPDCVYYMRTGFCGYGARCRYNHPR 75 789********************96 PP
2	zf-CCCH	39.5	9.5e-13	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ NNU_001735-RA 97 QPVCQYFMKTGTCKFGASCKYHHPR 121 689********************96 PP
3	zf-CCCH	35.8	1.4e-11	142	167	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ NNU_001735-RA 142 GEKECSYYVKTGQCKFGVTCKFHHPQ 167 7899********************97 PP
4	zf-CCCH	39	1.4e-12	304	330	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG+Ck+G++Ck++H+p NNU_001735-RA 304 PGHPECQYYMRTGECKFGSSCKYHHPP 330 5789*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.0E-6	48	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.577	48	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-8	51	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	52	77	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-5	54	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.929	94	122	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-7	94	121	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-7	95	122	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-10	97	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-5	99	121	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	140	168	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.9E-5	140	167	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-6	142	168	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-9	142	167	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	146	166	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.939	303	331	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.6E-7	303	330	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-10	305	330	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-6	306	331	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	309	330	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEMYGRNPAM EGSQSDPPVD WNSPGAQTGL EEPMWQMGLV SRDSYPERPN EPDCVYYMRT 60 GFCGYGARCR YNHPRDRSAV LGSARPGGVE YPERVGQPVC QYFMKTGTCK FGASCKYHHP 120 RHGGGSVSPV SLNYHGYPLR PGEKECSYYV KTGQCKFGVT CKFHHPQPAG SSVPAPASSF 180 YPMVQSPSVP SQQYGGVAAN WQVARPPLLP GSYVQGAYGH VLLSPGMVSV PGWSPYPGLL 240 VHLQAPVSPV ASPGTQPTVG GGPLYGVTQL SPSAPAYAGP YPPLPSSAGP SSSSQKEHVY 300 PERPGHPECQ YYMRTGECKF GSSCKYHHPP EWITPKTNCI LSPIGLPLRS

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEMYGRNPAM EGSQSDPPVD WNSPGAQTGL EEPMWQMGLV SRDSYPERPN EPDCVYYMRT  60
GFCGYGARCR YNHPRDRSAV LGSARPGGVE YPERVGQPVC QYFMKTGTCK FGASCKYHHP  120
RHGGGSVSPV SLNYHGYPLR PGEKECSYYV KTGQCKFGVT CKFHHPQPAG SSVPAPASSF  180
YPMVQSPSVP SQQYGGVAAN WQVARPPLLP GSYVQGAYGH VLLSPGMVSV PGWSPYPGLL  240
VHLQAPVSPV ASPGTQPTVG GGPLYGVTQL SPSAPAYAGP YPPLPSSAGP SSSSQKEHVY  300
PERPGHPECQ YYMRTGECKF GSSCKYHHPP EWITPKTNCI LSPIGLPLRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241841.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 32-like
Swissprot	Q84W91	1e-146	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A1U7Z4X6	0.0	A0A1U7Z4X6_NELNU; zinc finger CCCH domain-containing protein 32-like
STRING	XP_010241841.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-132	C3H family protein