PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001773-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ZF-HD

Protein Properties

Length: 222aa MW: 24522.3 Da PI: 7.8883

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001773-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.8	2.2e-32	47	102	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNhA+ +GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e+e NNU_001773-RA 47 VSRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETEG 102 579***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.1E-30	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-29	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-24	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.594	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.3E-32	146	221	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.83E-20	147	220	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.0E-25	159	215	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEFDDHEEQD EEMGIPVSAT YDSLGNSARA KMASAAGDAA SSGRRTVSRY RECLKNHAVG 60 IGGHAVDGCG EFMAAGEEGT LDALKCAACN CHRNFHRKET EGDAYHHQFS PYYRTPAGYL 120 HVAPHHRPLA LPSTSGGGAH SREDQEDVSN PSGGGGVSKK RFRTKFTQEQ KDKMLAFAER 180 LGWRIQKHDE AAVQQFCTET CVKRHVLKVW MHNNKHTLGK KP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-28	158	217	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266504.1	1e-165	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	8e-90	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1U8AKJ6	1e-163	A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like
STRING	XP_010266504.1	1e-164	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-80	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]