PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001801-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 254aa    MW: 29291.9 Da    PI: 9.9249
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001801-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix401e-1228117185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    +W+++ + +Li+a +++  +l+rg+l  ++W+ev +++     + ++ +r+ +qCk++++ l+k+yk +k +     +  +s+++++  l
  NNU_001801-RA  28 CWSEEATYTLIKAWSDRYIELNRGNLHRKDWQEVTNAVnvrhgAIKKNRRTDVQCKNRIDTLKKKYKIEKGRILASDEXLTSSWSFYYCL 117
                    7*************************************987765566689*****************99988777777778899998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-2126118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDQNSPQRFS HGIRATPSHN PLPFYEDCWS EEATYTLIKA WSDRYIELNR GNLHRKDWQE  60
VTNAVNVRHG AIKKNRRTDV QCKNRIDTLK KKYKIEKGRI LASDEXLTSS WSFYYCLDPL  120
IGSTVPVKKP SPPLALPLLY RKTPPSRPHA SLISVAVRST KEKRPSPAVD DSFFRRNYSV  180
VAAAAVATEN DTDSEPSRSI TESRRRDGEA DGFRQLAQAI TRFEEIYERV EGAKQRQMIE  240
LEKQRIIKDC RVSY
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054876.10.0PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9LJG85e-27ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8Q9Y30.0A0A1U8Q9Y3_NELNU; trihelix transcription factor ASIL1-like
STRINGXP_010273923.11e-178(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-48sequence-specific DNA binding transcription factors