PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001809-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 334aa    MW: 37113.8 Da    PI: 4.6933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001809-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1958111356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  NNU_001809-RA  58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                    566899***********************************************9 PP
2HD-ZIP_I/II128.72.4e-4157149193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y++lke++++L++++e+L +e++e
  NNU_001809-RA  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYNLLKSNYETLKESHNALQQDKEALLAEIRE 149
                    69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-1943115IPR009057Homeodomain-like
PROSITE profilePS5007117.50853113IPR001356Homeobox domain
SMARTSM003896.3E-1856117IPR001356Homeobox domain
PfamPF000463.8E-1658111IPR001356Homeobox domain
CDDcd000862.60E-1658114No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2060120IPR009057Homeodomain-like
PRINTSPR000319.7E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000319.7E-693109IPR000047Helix-turn-helix motif
PfamPF021831.3E-14113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKRLGSSESL GAVISICPSA EEKGLGASNH VYRRSFQSML DGLDEEDCLE EQGQISEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYN  120
LLKSNYETLK ESHNALQQDK EALLAEIREL KSKLGEENTE SNISVKQEAV MSESDNVATG  180
QSKIPAAGVL GGSEATEPNQ EGYKNSNANN GVGASGFTDF KDGSSDSDSS AILNEDNSPN  240
AAISSPGVFQ QNQILVSPTS SSLRFNCSSS SSPSSINCFQ FADSRGVSAS AQKAYQHQLM  300
RMEEHNFFNA EEPCNFFSED QAPSLQWYYP DQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266919.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U8AVF90.0A0A1U8AVF9_NELNU; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_010266919.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-62homeobox protein 6