PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001858-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 283aa    MW: 31848.3 Da    PI: 9.1791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001858-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-06124143120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  nL+ H+
  NNU_001858-RA 124 FSCHLCKKTFNRYNNLQMHM 143
                    89*****************9 PP
2zf-C2H211.70.00081212234123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgks   k + ++H +++
  NNU_001858-RA 212 FMCRKCGKSLAVKGDWRTHEKNC 234
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5118146No hitNo description
Gene3DG3DSA:3.30.160.604.8E-4123143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.51124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SMARTSM00355200175207IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.13E-5198232No hitNo description
Gene3DG3DSA:3.30.160.602.5E-4208232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110212232IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725232265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGSSVDCRDD SNPVTCSFAK DIESYALYQD TNNTIQNSVE PLPLLSCLLR PATPTLAVDE  60
NHETAGNEDG KNVTVALHLH IGLPNSSNCS TYTKQNDMMR DKNAVDTQYW IPTPAQILMG  120
YTYFSCHLCK KTFNRYNNLQ MHMWGHGSQY RKGAESLRGA YQPRGRGSML SIPCYCCAEG  180
CKNNISYPKG KPLKGFRTLQ THYKRKHGMK PFMCRKCGKS LAVKGDWRTH EKNCGKLWLC  240
VCGSDFKHKR SLKDHIRAFG SGHEPFPTSS IGDALLNKTF TRT
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274048.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG32e-95TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1U8B0460.0A0A1U8B046_NELNU; protein TRANSPARENT TESTA 1-like
STRINGXP_010274048.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-97C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]