PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001942-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 416aa    MW: 45463 Da    PI: 9.3087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001942-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05181203223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     CpdCg++F+  ++L+ H++  H
  NNU_001942-RA 181 ACPDCGEVFPKIESLELHQSIrH 203
                    6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.6180208IPR007087Zinc finger, C2H2
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
SuperFamilySSF563992.21E-26205413No hitNo description
Gene3DG3DSA:3.90.228.102.3E-14205413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MKDRVRSATS VFYFLALLFM AVSTFFHTTS TEKQQHPKCK RKQQKKLSSW DQIKSLLTCK  60
QIVGSRVHDP SRNVGGYLKL GASCSSICSF KDVVHGNTRV VHRADNSPES SSLGQETALL  120
SRKAVTASSN RSSSGSMRSS GGGAYSSSSR GKQLIKLSGC YECHMIVDPA RIPSSRSTIC  180
ACPDCGEVFP KIESLELHQS IRHAVTELGP EDSGRNIVEI IFKSSWLKKD NPICKIERIL  240
KVHNTQRTIQ RFEDCRDAVK ARVSNSTKKN PRCAADGNEL LRFHCTTLTC ELGARGSTSL  300
CGCIPGCGVC TIIRHGFPGK VHDSKGVRTT ASSGKAHDSL GSVEGRRAML VCRVIAGRVK  360
RIADDAPADE ESMSTATYEC DSVAGYAGVY TNHEELFIFN PRAILPCFVV IYKALN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268436.10.0PREDICTED: uncharacterized protein LOC104605392
TrEMBLA0A1U8AL170.0A0A1U8AL17_NELNU; uncharacterized protein LOC104605392
STRINGXP_010268436.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-161C2H2-like zinc finger protein