PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001995-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 738aa    MW: 84302.5 Da    PI: 9.4665
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001995-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.15e-16131221199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+kv+++s+v++  +l lp kf+ ++   +++++t+ l de+g++   k+      +r+ l++GW++F  a++L egD+++F+l+  ++f  +v +
  NNU_001995-RA 131 FVKVMLRSHVTNGFWLGLPAKFCLSNL--PKQDTTIALVDENGQETPAKY--LA--QRVGLSGGWRGFSIAHKLVEGDVLIFQLVTVTKF--KVYI 218
                    89*********************9995..33778****************..44..4577***********************9987777..8888 PP

                    E-S CS
             B3  97 frk 99 
                    +r+
  NNU_001995-RA 219 IRE 221
                    875 PP
2B347.92.4e-15623712198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+k++++s+v+   +l l+ +f++ + ++k ++ t++lede+g++   ++  +k++    l++GW++F+ +++L +gD +vF+l++r++f  +v +
  NNU_001995-RA 623 FVKTMLQSHVTGGFWLGLSVQFCKMN-LPK-RDETIILEDENGEEHPTTFLAQKTG----LSAGWRGFAISHELVDGDALVFQLVKRTTF--KVYI 710
                    89*********************777.454.5569***************444444....************************998888..8888 PP

                    E- CS
             B3  97 fr 98 
                    +r
  NNU_001995-RA 711 IR 712
                    77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-19124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22124222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-23129220No hitNo description
SMARTSM010191.0E-19131222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407131222IPR003340B3 DNA binding domain
PfamPF023621.1E-14131221IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-20616713IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-23616714IPR015300DNA-binding pseudobarrel domain
CDDcd100174.04E-24621712No hitNo description
SMARTSM010194.0E-21623714IPR003340B3 DNA binding domain
PfamPF023621.9E-13623712IPR003340B3 DNA binding domain
PROSITE profilePS5086311.603623714IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MVVDQKAKED TERVKAEVKE DMKDNEDRVT LSRLFQTRQS PTPSPNPTST VSRSKPKETI  60
TKLFRRRWHS APPRIRKKQK VVVHHAQTCK SYKQKRSIID RLFASGKANP TSAMERAREV  120
RMNLEPEFPS FVKVMLRSHV TNGFWLGLPA KFCLSNLPKQ DTTIALVDEN GQETPAKYLA  180
QRVGLSGGWR GFSIAHKLVE GDVLIFQLVT VTKFKVYIIR ENDLTEVDGA LGLLNLDGRA  240
RKMDSAEDED PPPFLPVHAE KRQKTNHPIS ISHLGMPSGE KSENDGQEVG PEVLETGIRF  300
SGANVEFKDV NNFEDFNIVV NDLIINSELP EHVRKNYYQL CCSQKAFLHD NLLEGINCLL  360
SSGVISETVN IADAIRACKL TTASKDDLMK WDKSLQAFEY LGMNVGFLRS RLNCLVDLAF  420
GSEEAVALRR YKEGMVAQSQ LEENIRNLEV KLVQLKETHK RYEDEIKSLK VQTEMLEIKF  480
QEKAKPTTYE DLRRQRLEEN KKRMEDLNLT QLAQTLRNAS PKPSPVKQMK PRTLRPQVDL  540
AAVRRSTRVA NKPPPNYKEV EFFFHLLFYF VNISYTILPL VTTRSYKRRD LSNRVYASDE  600
ARSYAIERAE KLLENLEPEY PSFVKTMLQS HVTGGFWLGL SVQFCKMNLP KRDETIILED  660
ENGEEHPTTF LAQKTGLSAG WRGFAISHEL VDGDALVFQL VKRTTFKVYI IRVNDHEEVD  720
KTSSVTNVGA KRINAGKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269230.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1U8AS920.0A0A1U8AS92_NELNU; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_010269230.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-77B3 family protein