PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002039-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 303aa    MW: 34259.9 Da    PI: 5.3502
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002039-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.53.9e-37101012102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+++ed++++++isw++ng++fvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell++i
  NNU_002039-RA  10 FLTKTYQLVEDASTDDVISWNDNGTTFVVWKPADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEYFRRGEKELLSEI 96 
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  NNU_002039-RA  97 HRRKA 101
                    ***86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-38799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAHRSVPAPF LTKTYQLVED ASTDDVISWN DNGTTFVVWK PADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDRWEF ANEYFRRGEK ELLSEIHRRK ATVQINAGGK PNEGGGGRSS  120
SPVNSGEDMG SSSTSSPDSK NHASDETTAT ATQHLSDLSD ENEKLRKDNQ LLSSELEQTK  180
KQCEELIAFL SKYINVPPEQ INRIMMQGSD NDRLSMLLVD DKKNNNNKEE EEKGDEDEKG  240
EEERQSLKLF GVWLKGKKRM REEKGEGGGA SSSSLKKQMK RMDFDAPWMK ISSSPGETSE  300
VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-25610317124Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115GGKPNEGGG
2274280LKKQMKR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269874.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-110HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1U8APX90.0A0A1U8APX9_NELNU; heat shock factor protein HSF24
STRINGXP_010269874.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-73heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]