PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002061-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 380aa MW: 40821.4 Da PI: 6.6429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002061-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	7.1e-16	216	262	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq NNU_002061-RA 216 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 262 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-20	209	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-20	209	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.66E-18	215	266	No hit	No description
Pfam	PF00010	2.4E-13	216	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MADMYEKTCS SLPPPSSSPT PTPPSRPAVE SDDISLFLRH FLHSSSSSSA CMSDRSNQMP 60 FSSSSLSAPA PPAFFSSSPL TTSKALPEHP HHPYGSSLPF DSADCRVRNG TSNSKVESSG 120 VAVSSSSSFI FSSSGLCFPS EAKEKATITT SVGTADCDDV TATAKQRKSP LDNDLDDYEC 180 ESEEGLETSE EPSKPMPPRS TSSSSSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP 240 NSNKTDKASM LDEAIEYLKQ LQLQVQMLSM RNGLSLHPVY LPGVLQPIPL PQVPMDFSGG 300 SGSLHMTAGT STLPMNQETS TRMAFSLPNQ CTSSHQPVVL PSMTNISNSE TSFGIGSSHQ 360 AHHGPFLFSS SKLGDQKYVT

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MADMYEKTCS SLPPPSSSPT PTPPSRPAVE SDDISLFLRH FLHSSSSSSA CMSDRSNQMP  60
FSSSSLSAPA PPAFFSSSPL TTSKALPEHP HHPYGSSLPF DSADCRVRNG TSNSKVESSG  120
VAVSSSSSFI FSSSGLCFPS EAKEKATITT SVGTADCDDV TATAKQRKSP LDNDLDDYEC  180
ESEEGLETSE EPSKPMPPRS TSSSSSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP  240
NSNKTDKASM LDEAIEYLKQ LQLQVQMLSM RNGLSLHPVY LPGVLQPIPL PQVPMDFSGG  300
SGSLHMTAGT STLPMNQETS TRMAFSLPNQ CTSSHQPVVL PSMTNISNSE TSFGIGSSHQ  360
AHHGPFLFSS SKLGDQKYVT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY679615	4e-64	AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds.
GenBank	KP689411	4e-64	KP689411.1 Prunus pseudocerasus isolate Unigene12366 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019054818.1	0.0	PREDICTED: transcription factor SPATULA isoform X3
TrEMBL	A0A1U8Q7R5	0.0	A0A1U8Q7R5_NELNU; transcription factor SPATULA isoform X3
STRING	XP_010270226.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	5e-39	bHLH family protein