PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002079-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WOX

Protein Properties

Length: 214aa MW: 24352.6 Da PI: 10.0565

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002079-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	78	137	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ NNU_002079-RA 78 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEKITAQLgkfgKIEGKNVFYWFQNHKARERQ 137 7***************99************************************97 PP
2	Wus_type_Homeobox	117.3	7e-38	78	139	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L ++Gkie+kNVfyWFQN+kaRerqkq NNU_002079-RA 78 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEKITAQLGKFGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.106	73	138	IPR001356	Homeobox domain
SMART	SM00389	5.7E-7	75	142	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-12	75	144	IPR009057	Homeodomain-like
Pfam	PF00046	6.1E-19	78	137	IPR001356	Homeobox domain
CDD	cd00086	2.04E-5	78	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-7	79	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MRSLNMKVHQ LARGLWEHEP SLTLGCKRLR PLAPKLTNGE TPAILDLKSF IKPESSSGPS 60 KSDDKREAVQ VDAPSGGTRW NPTQEQIGIL EMLYRGGMRT PNAQQIEKIT AQLGKFGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLVHSP RTPPATTVAL DVNRDEIERE EDSHYKRKHR 180 GWAIEFFQQD RGFCGGGEEG DKTLELFPLH PEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270556.1	1e-159	PREDICTED: WUSCHEL-related homeobox 4-like
Refseq	XP_010270564.1	1e-159	PREDICTED: WUSCHEL-related homeobox 4-like
Refseq	XP_010270572.1	1e-159	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	3e-64	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1U8AS26	1e-158	A0A1U8AS26_NELNU; WUSCHEL-related homeobox 4-like
STRING	XP_010270556.1	1e-159	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-66	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]