PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002081-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 153aa    MW: 16767.7 Da    PI: 9.5268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002081-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-173078355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  NNU_002081-RA 30 FRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 78
                   8*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103222.012986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-293087IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-203087IPR016177DNA-binding domain
CDDcd000181.39E-273088No hitNo description
PRINTSPR003672.4E-113041IPR001471AP2/ERF domain
PfamPF008472.3E-103078IPR001471AP2/ERF domain
PRINTSPR003672.4E-116888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGEYCSTTS SCSSTGGGGT RKGTQKDRPF RGIRMRKWGK WVAEIREPNK RSRIWLGSYS  60
TPVAAARAYD TAVFYLRGRS ARLNFPDLFV AEDELQDMSA ASIRKKATEV GAKVDALATG  120
KQTSPHLISS CSSRPSDKPD LNQTPTPESS DDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-152686263ATERF1
3gcc_A8e-152686263ATERF1
5wx9_A1e-1430891575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270594.11e-110PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH943e-52ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8AVL21e-109A0A1U8AVL2_NELNU; ethylene-responsive transcription factor ERF010
STRINGXP_010270594.11e-110(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-53DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]