PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002082-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 399aa MW: 45824.9 Da PI: 9.6597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002082-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	167	190	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H NNU_002082-RA 167 YICGVCGRKCRTNLDLKKHFKQlH 190 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.8E-8	87	157	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.637	167	195	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	169	190	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.05E-13	179	321	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.8E-8	252	317	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MSPLCNPTDF LPLKASPPFL LKTKFTTSVP SSIPRTRTPL VLRNAAPPSK SKPKRKRFQW 60 RIQASAASTA SSEIDMVRNN QGVWAAKQKK VVILWDLDNK PPRGPPYQAA MALREVAQRF 120 GEVVDISAYA NRHAFIHLPQ WVLGERRERR RLDILERKGL SFPDESYICG VCGRKCRTNL 180 DLKKHFKQLH ERERQKKLSR MRSLKGKKRQ RYKERFISGN HKYEEAARSL LTPKVGYGLA 240 SELRRAGVFV KTVEDKPQAA DWALKRQMQH SMNRGIDWLF LVSDDSDFSE MLERARNSNL 300 RTVVVGDWDR ALGRHADLWV SWVEVENGEV TEEDLLSKSR RTRNEYSDGD DGLFSLTYSD 360 EDSDYDSDLD GFVDELVITD SQFGGLRISA FSEGEEEDD

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MSPLCNPTDF LPLKASPPFL LKTKFTTSVP SSIPRTRTPL VLRNAAPPSK SKPKRKRFQW  60
RIQASAASTA SSEIDMVRNN QGVWAAKQKK VVILWDLDNK PPRGPPYQAA MALREVAQRF  120
GEVVDISAYA NRHAFIHLPQ WVLGERRERR RLDILERKGL SFPDESYICG VCGRKCRTNL  180
DLKKHFKQLH ERERQKKLSR MRSLKGKKRQ RYKERFISGN HKYEEAARSL LTPKVGYGLA  240
SELRRAGVFV KTVEDKPQAA DWALKRQMQH SMNRGIDWLF LVSDDSDFSE MLERARNSNL  300
RTVVVGDWDR ALGRHADLWV SWVEVENGEV TEEDLLSKSR RTRNEYSDGD DGLFSLTYSD  360
EDSDYDSDLD GFVDELVITD SQFGGLRISA FSEGEEEDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263460.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263462.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263465.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_010263466.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054064.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054065.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054066.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054067.1	0.0	PREDICTED: uncharacterized protein LOC104601724
Refseq	XP_019054068.1	0.0	PREDICTED: uncharacterized protein LOC104601724
TrEMBL	A0A1U8AM36	0.0	A0A1U8AM36_NELNU; uncharacterized protein LOC104601724
STRING	XP_010270606.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-153	C2H2-like zinc finger protein