PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002144-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HB-PHD
Protein Properties Length: 769aa    MW: 84984.5 Da    PI: 4.6404
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002144-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-12613658954
                    HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k  ++ L e+F++nryp+++++e L k+lg+t rqV+ WF N R  
  NNU_002144-RA 613 KAVTQKLYEAFRRNRYPDRATKENLVKELGITLRQVSKWFENARRS 658
                    677899************************************9975 PP
2PHD40.75.5e-14239294151
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ Cg+    ++++++lCdg C++ fH+ Cl+++l++ee+p g   wlC+ C++k
  NNU_002144-RA 239 FCAKCGSkdLSTDNDIILCDGiCDRGFHQMCLEPPLSKEEIPPGdeGWLCPGCDCK 294
                    699***977667********88********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.7E-14229297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.0E-13235294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.065237294IPR019787Zinc finger, PHD-finger
CDDcd155046.27E-27239291No hitNo description
SMARTSM002492.3E-9239292IPR001965Zinc finger, PHD-type
PfamPF006281.5E-11239294IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590240291IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.183602662IPR001356Homeobox domain
SMARTSM003892.9E-13605666IPR001356Homeobox domain
SuperFamilySSF466891.41E-12606660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-13607667IPR009057Homeodomain-like
CDDcd000867.39E-13607660No hitNo description
PfamPF000466.0E-10613657IPR001356Homeobox domain
PROSITE patternPS000270637660IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MILSEELVMH MGAASPVKES DDKQKISSPE ESKLGQNVQL DSGNIQSEPK EPMAGGSDVA  60
DTEKLEPESK VVTKNSSRSA YKKNKVSSKS IKRKYMLRSS TSSTRVLRSM SRGTSKPPVP  120
SSNMGNATTE SGKKRKRKKK VSKTLNDEFS TIRKRIRYLL TRMNYEQSLI DAYSGEGWKG  180
NSLEKIKPEK ELQRATAEIL RCKLRIRELF QHLSSLCSVG RLQESLFDSE GQIYSEDIFC  240
AKCGSKDLST DNDIILCDGI CDRGFHQMCL EPPLSKEEIP PGDEGWLCPG CDCKVDCIEL  300
LNELRGLDLS INDNWEKIFP EAAAAAAAGD NQDGDFGFPS DDSEDYDYDP NGPQVDDEKV  360
QTDDSSSEES DFTSASDDSG PPPNDDLYLG LPSDDSEDND YDPTARDPDE HANRESSNSD  420
FTSDSEDFSA LSDHNIPMVT DEIPVSSSVD GTKPLTGSSE RSKMDRKRKT PIHSELLSKL  480
QPDEENALPV SGKRHRELLD YKKLHDETYG NLPSDSSDDE DWTATDAPSK GNNCAVKSTS  540
VSPNGNLPTI NNGITTKGER QNLEVTNNTP KETHQIPELG DASHTADKTN EDDQEPCSIE  600
KTSTTPKHRS LGKAVTQKLY EAFRRNRYPD RATKENLVKE LGITLRQVSK WFENARRSLR  660
LSANEAEPTS ANKVSALAPE NGKVLEPEPK MPSKDDATND GMDRESSKEG HTEAVAMECL  720
SGKEEKKDLE TGESSQQKLA APNSRKAHLD DQTPIETLNS GETPMEAQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137KKRKRK
2132139KKRKRKKK
3133139KRKRKKK
4134138RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271495.10.0PREDICTED: homeobox protein HOX1A
RefseqXP_010271502.10.0PREDICTED: homeobox protein HOX1A
TrEMBLA0A1U8B6I60.0A0A1U8B6I6_NELNU; homeobox protein HOX1A
STRINGXP_010271495.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain