PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002197-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 234aa    MW: 25589.3 Da    PI: 8.1556
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002197-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++Cvl+ ++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q++
  NNU_002197-RA   2 SCNGCRVLRKGCSESCVLRHCLqwienPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHVCQSA 97 
                    6*********************************************************************************************** PP

         DUF260  92 aelall 97 
                    +e++l+
  NNU_002197-RA  98 VETVLR 103
                    998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9471107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-262100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCVLR HCLQWIENPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHVCQSAVET VLRGGTLRPM TDFLAGILMH  120
DTDEASEVEV PCSNTDKQQP PRDLCSRSRA PKRRGLHELA APNLQPGDLD LSLMPGLPKR  180
VATGGRGGMM YVKEKRRPVS PSMNSEESVT TSFDSEAVAD QTRSGERKLL NLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RAPKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272301.11e-174PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN233e-78LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1U8B7Q81e-173A0A1U8B7Q8_NELNU; LOB domain-containing protein 37-like
STRINGXP_010272301.11e-174(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-80LOB domain-containing protein 38