PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002291-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 461aa MW: 50861 Da PI: 6.8422

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002291-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	277	325	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq NNU_002291-RA 277 NSHSLAERVRREKISERMRFLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 325 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-17	272	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.03E-10	272	329	No hit	No description
PROSITE profile	PS50888	15.307	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-17	275	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-6	277	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-9	280	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGADDNGDLG FQQRCGSLLN CPSSGMYVPE KVVGMTASSM SMSKSSNVVD SFFPSPWDPF 60 VSQAQNVEFQ VSSIVSPHQI TTSTYGVGML ENRGVSPHLV QFPSDPNLVD LAPKLPCFGS 120 GSFSDMVSSL GLPDCDQIVN ADCLDYPSSN KEGDTEKTAS STNGAIHARV FQEDQQDDGA 180 GGPSPNGKKR KRVPENHSQF DTSQGQSLEA EQQKDLSQKT LDGANEQDEK KQKNEQNPGA 240 NSRGKVTGKQ AKDRSQNGDA PKEDYIHVRA RRGQATNSHS LAERVRREKI SERMRFLQDL 300 VPGCNKVTGK AGMLDEIINY VQSLQRQVEF LSMKLATVNP ELNINMERFL SKDVNASFTR 360 WQFKYSWICS RNELLFSTTA HNSITGCLAS SPGYKSTVNP HSSGKTNELL YLPFLSFVHQ 420 SLIIEPSGYR YPVHGMMSFK VLSNWASFLT QLWTILVIMV A

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGADDNGDLG FQQRCGSLLN CPSSGMYVPE KVVGMTASSM SMSKSSNVVD SFFPSPWDPF  60
VSQAQNVEFQ VSSIVSPHQI TTSTYGVGML ENRGVSPHLV QFPSDPNLVD LAPKLPCFGS  120
GSFSDMVSSL GLPDCDQIVN ADCLDYPSSN KEGDTEKTAS STNGAIHARV FQEDQQDDGA  180
GGPSPNGKKR KRVPENHSQF DTSQGQSLEA EQQKDLSQKT LDGANEQDEK KQKNEQNPGA  240
NSRGKVTGKQ AKDRSQNGDA PKEDYIHVRA RRGQATNSHS LAERVRREKI SERMRFLQDL  300
VPGCNKVTGK AGMLDEIINY VQSLQRQVEF LSMKLATVNP ELNINMERFL SKDVNASFTR  360
WQFKYSWICS RNELLFSTTA HNSITGCLAS SPGYKSTVNP HSSGKTNELL YLPFLSFVHQ  420
SLIIEPSGYR YPVHGMMSFK VLSNWASFLT QLWTILVIMV A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010273618.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
Swissprot	Q6NKN9	5e-60	BH074_ARATH; Transcription factor bHLH74
Swissprot	Q9CAA9	2e-59	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A1U8B2Y1	0.0	A0A1U8B2Y1_NELNU; transcription factor bHLH74-like isoform X1
STRING	XP_010273618.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-62	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]