PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002328-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 241aa    MW: 27822.1 Da    PI: 8.3357
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002328-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2081133456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    ++++t +q++ Le+ F++++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  NNU_002328-RA  81 KRRLTGDQIKSLERSFQEEMKLEPERKMRLARELGLQPRQVAVWFQNRRARWK 133
                    4479************************************************9 PP
2HD-ZIP_I/II122.91.6e-3980171293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +krrl+ +q+k+LE+sF+ee kLeperK++lareLglqprqvavWFqnrRAR+k+kqlE+ y aLk+++d +++e+++L++ev +Lr++l+e
  NNU_002328-RA  80 RKRRLTGDQIKSLERSFQEEMKLEPERKMRLARELGLQPRQVAVWFQNRRARWKAKQLERVYGALKHEFDVISREKQKLQEEVMKLRAKLEE 171
                    8**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2053136IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1965137IPR009057Homeodomain-like
PROSITE profilePS5007117.70275135IPR001356Homeobox domain
SMARTSM003895.0E-1777139IPR001356Homeobox domain
CDDcd000868.65E-1680136No hitNo description
PfamPF000462.0E-1781133IPR001356Homeobox domain
PRINTSPR000311.0E-5106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5115131IPR000047Helix-turn-helix motif
PfamPF021831.2E-8135169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGDPKMDWNC NFRSSASRAV DHTFTFLFDS SYDHPFAGME MKRCPAEEMV ERSSAIPSSN  60
KRNDNQDNHD NSNHNNQEIR KRRLTGDQIK SLERSFQEEM KLEPERKMRL ARELGLQPRQ  120
VAVWFQNRRA RWKAKQLERV YGALKHEFDV ISREKQKLQE EVMKLRAKLE ERATAKQGST  180
VHTEGSAEET VESASVASRS SNKLNGSTNH PQIAECSNCI FNSDDYNPAL PPFWVVMPGY  240
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARWKAKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243186.10.0PREDICTED: homeobox-leucine zipper protein ATHB-22-like
TrEMBLA0A1U7YV780.0A0A1U7YV78_NELNU; homeobox-leucine zipper protein ATHB-22-like
STRINGXP_010243186.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-45homeobox 51